Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC13.3□□□□□ -0.28
Trav11A0A0B4J1J9 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trav11A0A0B4J1J9 Gm7143-201ENSMUST00000222811 859 ntBASIC13.3□□□□□ -0.28
Trav11A0A0B4J1J9 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Trav11A0A0B4J1J9 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trav11A0A0B4J1J9 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trav11A0A0B4J1J9 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Gm38342-201ENSMUST00000195710 2980 ntBASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trav11A0A0B4J1J9 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trav11A0A0B4J1J9 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.28
Trav11A0A0B4J1J9 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC13.27□□□□□ -0.28
Trav11A0A0B4J1J9 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trav11A0A0B4J1J9 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Trav11A0A0B4J1J9 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
Trav11A0A0B4J1J9 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trav11A0A0B4J1J9 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
Trav11A0A0B4J1J9 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trav11A0A0B4J1J9 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trav11A0A0B4J1J9 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Trav11A0A0B4J1J9 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trav11A0A0B4J1J9 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trav11A0A0B4J1J9 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC13.27□□□□□ -0.29
Trav11A0A0B4J1J9 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC13.27□□□□□ -0.29
Trav11A0A0B4J1J9 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trav11A0A0B4J1J9 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Trav11A0A0B4J1J9 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trav11A0A0B4J1J9 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trav11A0A0B4J1J9 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trav11A0A0B4J1J9 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Trav11A0A0B4J1J9 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trav11A0A0B4J1J9 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Trav11A0A0B4J1J9 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Trav11A0A0B4J1J9 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trav11A0A0B4J1J9 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trav11A0A0B4J1J9 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trav11A0A0B4J1J9 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC13.26□□□□□ -0.29
Trav11A0A0B4J1J9 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC13.26□□□□□ -0.29
Trav11A0A0B4J1J9 Mir6236-201ENSMUST00000184437 123 ntBASIC13.26□□□□□ -0.29
Trav11A0A0B4J1J9 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trav11A0A0B4J1J9 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC13.26□□□□□ -0.29
Trav11A0A0B4J1J9 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC13.26□□□□□ -0.29
Trav11A0A0B4J1J9 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC13.26□□□□□ -0.29
Trav11A0A0B4J1J9 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trav11A0A0B4J1J9 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC13.25□□□□□ -0.29
Trav11A0A0B4J1J9 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trav11A0A0B4J1J9 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
Trav11A0A0B4J1J9 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trav11A0A0B4J1J9 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trav11A0A0B4J1J9 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trav11A0A0B4J1J9 Gm13238-201ENSMUST00000117655 780 ntBASIC13.25□□□□□ -0.29
Trav11A0A0B4J1J9 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC13.25□□□□□ -0.29
Trav11A0A0B4J1J9 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC13.25□□□□□ -0.29
Trav11A0A0B4J1J9 Gm5784-201ENSMUST00000179344 2478 ntBASIC13.25□□□□□ -0.29
Trav11A0A0B4J1J9 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trav11A0A0B4J1J9 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trav11A0A0B4J1J9 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trav11A0A0B4J1J9 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trav11A0A0B4J1J9 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC13.25□□□□□ -0.29
Trav11A0A0B4J1J9 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trav11A0A0B4J1J9 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trav11A0A0B4J1J9 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms