Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 AC135963.1-201ENSMUST00000211640 717 ntBASIC23.45■■□□□ 1.34
Scn11aQ9R053 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Scn11aQ9R053 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Scn11aQ9R053 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC23.45■■□□□ 1.34
Scn11aQ9R053 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC23.45■■□□□ 1.34
Scn11aQ9R053 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Scn11aQ9R053 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Scn11aQ9R053 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC23.45■■□□□ 1.34
Scn11aQ9R053 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC23.45■■□□□ 1.34
Scn11aQ9R053 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Scn11aQ9R053 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC23.44■■□□□ 1.34
Scn11aQ9R053 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Scn11aQ9R053 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC23.44■■□□□ 1.34
Scn11aQ9R053 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Scn11aQ9R053 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC23.44■■□□□ 1.34
Scn11aQ9R053 Gm7977-201ENSMUST00000193787 748 ntBASIC23.44■■□□□ 1.34
Scn11aQ9R053 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC23.44■■□□□ 1.34
Scn11aQ9R053 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
Scn11aQ9R053 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Scn11aQ9R053 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Scn11aQ9R053 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Scn11aQ9R053 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Scn11aQ9R053 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Scn11aQ9R053 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC23.43■■□□□ 1.34
Scn11aQ9R053 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC23.43■■□□□ 1.34
Scn11aQ9R053 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
Scn11aQ9R053 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
Scn11aQ9R053 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
Scn11aQ9R053 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Scn11aQ9R053 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
Scn11aQ9R053 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Scn11aQ9R053 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC23.42■■□□□ 1.34
Scn11aQ9R053 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Scn11aQ9R053 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Scn11aQ9R053 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC23.42■■□□□ 1.34
Scn11aQ9R053 Gm42555-201ENSMUST00000199304 1039 ntBASIC23.42■■□□□ 1.34
Scn11aQ9R053 AC130671.1-201ENSMUST00000227384 1237 ntBASIC23.42■■□□□ 1.34
Scn11aQ9R053 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC23.41■■□□□ 1.34
Scn11aQ9R053 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
Scn11aQ9R053 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Scn11aQ9R053 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Scn11aQ9R053 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Scn11aQ9R053 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Scn11aQ9R053 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Scn11aQ9R053 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
Scn11aQ9R053 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC23.4■■□□□ 1.34
Scn11aQ9R053 Gm22240-201ENSMUST00000175225 82 ntBASIC23.4■■□□□ 1.34
Scn11aQ9R053 Gm20760-201ENSMUST00000179197 648 ntBASIC23.4■■□□□ 1.34
Scn11aQ9R053 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
Scn11aQ9R053 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
Scn11aQ9R053 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
Scn11aQ9R053 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Scn11aQ9R053 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC23.4■■□□□ 1.34
Scn11aQ9R053 Gm6802-201ENSMUST00000167843 1983 ntBASIC23.39■■□□□ 1.34
Scn11aQ9R053 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC23.39■■□□□ 1.34
Scn11aQ9R053 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.34
Scn11aQ9R053 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Scn11aQ9R053 Gm13534-201ENSMUST00000121169 513 ntBASIC23.39■■□□□ 1.33
Scn11aQ9R053 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Scn11aQ9R053 Gm43859-201ENSMUST00000200075 1412 ntBASIC23.39■■□□□ 1.33
Scn11aQ9R053 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC23.39■■□□□ 1.33
Scn11aQ9R053 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
Scn11aQ9R053 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC23.38■■□□□ 1.33
Scn11aQ9R053 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
Scn11aQ9R053 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Scn11aQ9R053 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Scn11aQ9R053 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC23.38■■□□□ 1.33
Scn11aQ9R053 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Scn11aQ9R053 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Scn11aQ9R053 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
Scn11aQ9R053 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Scn11aQ9R053 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
Scn11aQ9R053 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
Scn11aQ9R053 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
Scn11aQ9R053 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC23.37■■□□□ 1.33
Scn11aQ9R053 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC23.37■■□□□ 1.33
Scn11aQ9R053 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Scn11aQ9R053 Gm7860-201ENSMUST00000121190 879 ntBASIC23.37■■□□□ 1.33
Scn11aQ9R053 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC23.37■■□□□ 1.33
Scn11aQ9R053 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Scn11aQ9R053 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Scn11aQ9R053 Gm10655-201ENSMUST00000098658 1397 ntBASIC23.37■■□□□ 1.33
Scn11aQ9R053 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Scn11aQ9R053 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Scn11aQ9R053 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
Scn11aQ9R053 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Scn11aQ9R053 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Scn11aQ9R053 Gm4968-201ENSMUST00000071458 858 ntBASIC23.37■■□□□ 1.33
Scn11aQ9R053 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Scn11aQ9R053 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Scn11aQ9R053 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC23.36■■□□□ 1.33
Scn11aQ9R053 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Scn11aQ9R053 Gm26524-201ENSMUST00000192339 390 ntBASIC23.36■■□□□ 1.33
Scn11aQ9R053 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC23.36■■□□□ 1.33
Scn11aQ9R053 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Scn11aQ9R053 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Scn11aQ9R053 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
Scn11aQ9R053 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Scn11aQ9R053 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Scn11aQ9R053 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC23.35■■□□□ 1.33
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms