Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf3Q9QXK7 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf3Q9QXK7 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf3Q9QXK7 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf3Q9QXK7 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC21.01■□□□□ 0.95
Cpsf3Q9QXK7 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Cpsf3Q9QXK7 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf3Q9QXK7 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf3Q9QXK7 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf3Q9QXK7 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf3Q9QXK7 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf3Q9QXK7 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cpsf3Q9QXK7 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cpsf3Q9QXK7 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Cpsf3Q9QXK7 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cpsf3Q9QXK7 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
Cpsf3Q9QXK7 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Cpsf3Q9QXK7 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cpsf3Q9QXK7 Gm27801-201ENSMUST00000184174 223 ntBASIC20.99■□□□□ 0.95
Cpsf3Q9QXK7 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Cpsf3Q9QXK7 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cpsf3Q9QXK7 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cpsf3Q9QXK7 Gm20634-201ENSMUST00000090779 2956 ntBASIC20.99■□□□□ 0.95
Cpsf3Q9QXK7 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cpsf3Q9QXK7 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC20.98■□□□□ 0.95
Cpsf3Q9QXK7 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC20.98■□□□□ 0.95
Cpsf3Q9QXK7 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC20.98■□□□□ 0.95
Cpsf3Q9QXK7 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cpsf3Q9QXK7 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cpsf3Q9QXK7 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cpsf3Q9QXK7 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cpsf3Q9QXK7 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Cpsf3Q9QXK7 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Cpsf3Q9QXK7 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cpsf3Q9QXK7 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cpsf3Q9QXK7 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC20.97■□□□□ 0.95
Cpsf3Q9QXK7 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Cpsf3Q9QXK7 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cpsf3Q9QXK7 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cpsf3Q9QXK7 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
Cpsf3Q9QXK7 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
Cpsf3Q9QXK7 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC20.96■□□□□ 0.95
Cpsf3Q9QXK7 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cpsf3Q9QXK7 Gm10493-201ENSMUST00000097270 612 ntBASIC20.96■□□□□ 0.95
Cpsf3Q9QXK7 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cpsf3Q9QXK7 Gm10129-202ENSMUST00000193100 1316 ntBASIC20.96■□□□□ 0.95
Cpsf3Q9QXK7 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Cpsf3Q9QXK7 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cpsf3Q9QXK7 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cpsf3Q9QXK7 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Cpsf3Q9QXK7 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Cpsf3Q9QXK7 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cpsf3Q9QXK7 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cpsf3Q9QXK7 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC20.95■□□□□ 0.94
Cpsf3Q9QXK7 Gm8495-201ENSMUST00000188740 694 ntBASIC20.95■□□□□ 0.94
Cpsf3Q9QXK7 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cpsf3Q9QXK7 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cpsf3Q9QXK7 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Cpsf3Q9QXK7 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC20.94■□□□□ 0.94
Cpsf3Q9QXK7 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
Cpsf3Q9QXK7 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cpsf3Q9QXK7 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cpsf3Q9QXK7 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cpsf3Q9QXK7 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
Cpsf3Q9QXK7 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.94■□□□□ 0.94
Cpsf3Q9QXK7 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cpsf3Q9QXK7 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC20.94■□□□□ 0.94
Cpsf3Q9QXK7 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cpsf3Q9QXK7 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC20.94■□□□□ 0.94
Cpsf3Q9QXK7 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Cpsf3Q9QXK7 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cpsf3Q9QXK7 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cpsf3Q9QXK7 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cpsf3Q9QXK7 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cpsf3Q9QXK7 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cpsf3Q9QXK7 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cpsf3Q9QXK7 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC20.92■□□□□ 0.94
Cpsf3Q9QXK7 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC20.92■□□□□ 0.94
Cpsf3Q9QXK7 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cpsf3Q9QXK7 Gm5874-201ENSMUST00000096101 508 ntBASIC20.92■□□□□ 0.94
Cpsf3Q9QXK7 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Cpsf3Q9QXK7 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Cpsf3Q9QXK7 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Cpsf3Q9QXK7 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cpsf3Q9QXK7 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Cpsf3Q9QXK7 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cpsf3Q9QXK7 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cpsf3Q9QXK7 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC20.91■□□□□ 0.94
Cpsf3Q9QXK7 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC20.91■□□□□ 0.94
Cpsf3Q9QXK7 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cpsf3Q9QXK7 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cpsf3Q9QXK7 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Cpsf3Q9QXK7 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC20.91■□□□□ 0.94
Cpsf3Q9QXK7 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Cpsf3Q9QXK7 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cpsf3Q9QXK7 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cpsf3Q9QXK7 Gm20100-201ENSMUST00000209418 2272 ntBASIC20.9■□□□□ 0.94
Cpsf3Q9QXK7 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Cpsf3Q9QXK7 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Cpsf3Q9QXK7 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms