Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
Msh4Q99MT2 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Msh4Q99MT2 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC18.89■□□□□ 0.61
Msh4Q99MT2 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC18.89■□□□□ 0.61
Msh4Q99MT2 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Msh4Q99MT2 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC18.89■□□□□ 0.61
Msh4Q99MT2 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Msh4Q99MT2 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Msh4Q99MT2 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Msh4Q99MT2 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Msh4Q99MT2 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Msh4Q99MT2 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Msh4Q99MT2 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msh4Q99MT2 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Msh4Q99MT2 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC18.88■□□□□ 0.61
Msh4Q99MT2 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msh4Q99MT2 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msh4Q99MT2 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC18.88■□□□□ 0.61
Msh4Q99MT2 Wdr70-203ENSMUST00000227371 1130 ntBASIC18.88■□□□□ 0.61
Msh4Q99MT2 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msh4Q99MT2 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Msh4Q99MT2 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msh4Q99MT2 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC18.88■□□□□ 0.61
Msh4Q99MT2 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msh4Q99MT2 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Msh4Q99MT2 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Msh4Q99MT2 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msh4Q99MT2 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
Msh4Q99MT2 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Msh4Q99MT2 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msh4Q99MT2 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC18.87■□□□□ 0.61
Msh4Q99MT2 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msh4Q99MT2 Gm7160-202ENSMUST00000188519 1027 ntBASIC18.87■□□□□ 0.61
Msh4Q99MT2 Gm43017-201ENSMUST00000198296 752 ntBASIC18.87■□□□□ 0.61
Msh4Q99MT2 Gm43909-201ENSMUST00000203443 1876 ntBASIC18.87■□□□□ 0.61
Msh4Q99MT2 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msh4Q99MT2 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msh4Q99MT2 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Msh4Q99MT2 Hsf1-204ENSMUST00000226872 2104 ntBASIC18.87■□□□□ 0.61
Msh4Q99MT2 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msh4Q99MT2 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Gm6085-201ENSMUST00000182774 1470 ntBASIC18.86■□□□□ 0.61
Msh4Q99MT2 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Gm27045-201ENSMUST00000182145 1402 ntBASIC18.86■□□□□ 0.61
Msh4Q99MT2 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Msh4Q99MT2 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Mir6236-201ENSMUST00000184437 123 ntBASIC18.86■□□□□ 0.61
Msh4Q99MT2 Spcs1-204ENSMUST00000226782 949 ntBASIC18.86■□□□□ 0.61
Msh4Q99MT2 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh4Q99MT2 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Msh4Q99MT2 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Msh4Q99MT2 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Msh4Q99MT2 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Msh4Q99MT2 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Msh4Q99MT2 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Msh4Q99MT2 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Msh4Q99MT2 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Msh4Q99MT2 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Msh4Q99MT2 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC18.85■□□□□ 0.61
Msh4Q99MT2 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC18.85■□□□□ 0.61
Msh4Q99MT2 Gm10209-201ENSMUST00000203397 1607 ntBASIC18.85■□□□□ 0.61
Msh4Q99MT2 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msh4Q99MT2 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC18.84■□□□□ 0.61
Msh4Q99MT2 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Msh4Q99MT2 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msh4Q99MT2 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msh4Q99MT2 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC18.84■□□□□ 0.61
Msh4Q99MT2 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Msh4Q99MT2 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Msh4Q99MT2 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Msh4Q99MT2 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Msh4Q99MT2 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Msh4Q99MT2 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC18.83■□□□□ 0.6
Msh4Q99MT2 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Msh4Q99MT2 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
Msh4Q99MT2 Gm43173-201ENSMUST00000202246 593 ntBASIC18.83■□□□□ 0.6
Msh4Q99MT2 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC18.83■□□□□ 0.6
Msh4Q99MT2 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Msh4Q99MT2 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Msh4Q99MT2 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msh4Q99MT2 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC18.82■□□□□ 0.6
Msh4Q99MT2 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC18.82■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms