Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ushbp1Q8R370 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ushbp1Q8R370 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC21.83■■□□□ 1.09
Ushbp1Q8R370 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Ushbp1Q8R370 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Ushbp1Q8R370 Cdc34b-202ENSMUST00000188741 1252 ntBASIC21.83■■□□□ 1.09
Ushbp1Q8R370 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC21.83■■□□□ 1.09
Ushbp1Q8R370 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Ushbp1Q8R370 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
Ushbp1Q8R370 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Ushbp1Q8R370 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
Ushbp1Q8R370 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Ushbp1Q8R370 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Ushbp1Q8R370 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Ushbp1Q8R370 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Ushbp1Q8R370 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Ushbp1Q8R370 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Ushbp1Q8R370 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ushbp1Q8R370 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Ushbp1Q8R370 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ushbp1Q8R370 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Ushbp1Q8R370 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC21.81■■□□□ 1.08
Ushbp1Q8R370 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
Ushbp1Q8R370 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC21.81■■□□□ 1.08
Ushbp1Q8R370 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ushbp1Q8R370 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ushbp1Q8R370 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ushbp1Q8R370 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ushbp1Q8R370 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ushbp1Q8R370 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ushbp1Q8R370 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Ushbp1Q8R370 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Ushbp1Q8R370 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Ushbp1Q8R370 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC21.8■■□□□ 1.08
Ushbp1Q8R370 Gm26571-201ENSMUST00000181399 666 ntBASIC21.8■■□□□ 1.08
Ushbp1Q8R370 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC21.8■■□□□ 1.08
Ushbp1Q8R370 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC21.8■■□□□ 1.08
Ushbp1Q8R370 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
Ushbp1Q8R370 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Ushbp1Q8R370 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
Ushbp1Q8R370 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC21.79■■□□□ 1.08
Ushbp1Q8R370 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
Ushbp1Q8R370 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ushbp1Q8R370 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Ushbp1Q8R370 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC21.79■■□□□ 1.08
Ushbp1Q8R370 Gm42569-201ENSMUST00000200539 472 ntBASIC21.79■■□□□ 1.08
Ushbp1Q8R370 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ushbp1Q8R370 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Ushbp1Q8R370 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ushbp1Q8R370 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ushbp1Q8R370 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Ushbp1Q8R370 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ushbp1Q8R370 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ushbp1Q8R370 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Ushbp1Q8R370 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Ushbp1Q8R370 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC21.78■■□□□ 1.08
Ushbp1Q8R370 Gm26833-201ENSMUST00000180899 440 ntBASIC21.78■■□□□ 1.08
Ushbp1Q8R370 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
Ushbp1Q8R370 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ushbp1Q8R370 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ushbp1Q8R370 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC21.78■■□□□ 1.08
Ushbp1Q8R370 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
Ushbp1Q8R370 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ushbp1Q8R370 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC21.77■■□□□ 1.08
Ushbp1Q8R370 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC21.77■■□□□ 1.08
Ushbp1Q8R370 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC21.77■■□□□ 1.08
Ushbp1Q8R370 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ushbp1Q8R370 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ushbp1Q8R370 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Ushbp1Q8R370 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC21.77■■□□□ 1.08
Ushbp1Q8R370 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC21.77■■□□□ 1.08
Ushbp1Q8R370 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Ushbp1Q8R370 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.07
Ushbp1Q8R370 Gm43545-201ENSMUST00000196765 2779 ntBASIC21.76■■□□□ 1.07
Ushbp1Q8R370 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
Ushbp1Q8R370 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ushbp1Q8R370 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ushbp1Q8R370 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ushbp1Q8R370 Gm7160-202ENSMUST00000188519 1027 ntBASIC21.76■■□□□ 1.07
Ushbp1Q8R370 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ushbp1Q8R370 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ushbp1Q8R370 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ushbp1Q8R370 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC21.76■■□□□ 1.07
Ushbp1Q8R370 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ushbp1Q8R370 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ushbp1Q8R370 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Ushbp1Q8R370 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Ushbp1Q8R370 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Ushbp1Q8R370 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Ushbp1Q8R370 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Ushbp1Q8R370 Gm43060-201ENSMUST00000200621 289 ntBASIC21.75■■□□□ 1.07
Ushbp1Q8R370 Gm10493-201ENSMUST00000097270 612 ntBASIC21.75■■□□□ 1.07
Ushbp1Q8R370 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Ushbp1Q8R370 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC21.75■■□□□ 1.07
Ushbp1Q8R370 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Ushbp1Q8R370 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ushbp1Q8R370 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ushbp1Q8R370 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ushbp1Q8R370 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ushbp1Q8R370 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms