Protein–RNA interactions for Protein: Q8CDN8

Ccdc38, Coiled-coil domain-containing protein 38, mousemouse

Predictions only

Length 563 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc38Q8CDN8 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Ccdc38Q8CDN8 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Ccdc38Q8CDN8 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Ccdc38Q8CDN8 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Ccdc38Q8CDN8 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ccdc38Q8CDN8 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Ccdc38Q8CDN8 AC154266.1-201ENSMUST00000223190 503 ntBASIC21.56■■□□□ 1.04
Ccdc38Q8CDN8 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ccdc38Q8CDN8 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ccdc38Q8CDN8 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ccdc38Q8CDN8 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Ccdc38Q8CDN8 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Ccdc38Q8CDN8 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC21.55■■□□□ 1.04
Ccdc38Q8CDN8 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ccdc38Q8CDN8 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ccdc38Q8CDN8 Gm10209-201ENSMUST00000203397 1607 ntBASIC21.55■■□□□ 1.04
Ccdc38Q8CDN8 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ccdc38Q8CDN8 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Ccdc38Q8CDN8 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Ccdc38Q8CDN8 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ccdc38Q8CDN8 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC21.54■■□□□ 1.04
Ccdc38Q8CDN8 Gm9847-201ENSMUST00000052528 599 ntBASIC21.54■■□□□ 1.04
Ccdc38Q8CDN8 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ccdc38Q8CDN8 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Ccdc38Q8CDN8 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ccdc38Q8CDN8 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ccdc38Q8CDN8 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ccdc38Q8CDN8 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ccdc38Q8CDN8 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC21.53■■□□□ 1.04
Ccdc38Q8CDN8 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ccdc38Q8CDN8 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Ccdc38Q8CDN8 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Ccdc38Q8CDN8 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ccdc38Q8CDN8 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
Ccdc38Q8CDN8 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc38Q8CDN8 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC21.52■■□□□ 1.04
Ccdc38Q8CDN8 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc38Q8CDN8 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc38Q8CDN8 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc38Q8CDN8 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc38Q8CDN8 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc38Q8CDN8 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC21.52■■□□□ 1.04
Ccdc38Q8CDN8 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc38Q8CDN8 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc38Q8CDN8 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc38Q8CDN8 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC21.52■■□□□ 1.04
Ccdc38Q8CDN8 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc38Q8CDN8 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
Ccdc38Q8CDN8 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Ccdc38Q8CDN8 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Ccdc38Q8CDN8 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
Ccdc38Q8CDN8 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
Ccdc38Q8CDN8 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC21.51■■□□□ 1.03
Ccdc38Q8CDN8 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ccdc38Q8CDN8 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ccdc38Q8CDN8 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ccdc38Q8CDN8 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ccdc38Q8CDN8 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ccdc38Q8CDN8 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC21.51■■□□□ 1.03
Ccdc38Q8CDN8 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ccdc38Q8CDN8 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ccdc38Q8CDN8 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
Ccdc38Q8CDN8 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
Ccdc38Q8CDN8 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ccdc38Q8CDN8 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ccdc38Q8CDN8 Serp2-204ENSMUST00000228055 705 ntBASIC21.5■■□□□ 1.03
Ccdc38Q8CDN8 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ccdc38Q8CDN8 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Ccdc38Q8CDN8 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ccdc38Q8CDN8 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ccdc38Q8CDN8 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ccdc38Q8CDN8 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ccdc38Q8CDN8 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ccdc38Q8CDN8 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ccdc38Q8CDN8 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ccdc38Q8CDN8 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC21.49■■□□□ 1.03
Ccdc38Q8CDN8 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Ccdc38Q8CDN8 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Ccdc38Q8CDN8 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ccdc38Q8CDN8 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ccdc38Q8CDN8 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ccdc38Q8CDN8 Gm45640-201ENSMUST00000210665 1896 ntBASIC21.48■■□□□ 1.03
Ccdc38Q8CDN8 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ccdc38Q8CDN8 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ccdc38Q8CDN8 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Ccdc38Q8CDN8 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ccdc38Q8CDN8 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Ccdc38Q8CDN8 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC21.47■■□□□ 1.03
Ccdc38Q8CDN8 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc38Q8CDN8 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc38Q8CDN8 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc38Q8CDN8 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc38Q8CDN8 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc38Q8CDN8 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
Ccdc38Q8CDN8 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc38Q8CDN8 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc38Q8CDN8 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc38Q8CDN8 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc38Q8CDN8 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc38Q8CDN8 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC21.46■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 15.4 ms