Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Usp40Q8BWR4 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC26.91■■□□□ 1.9
Usp40Q8BWR4 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Usp40Q8BWR4 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
Usp40Q8BWR4 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Usp40Q8BWR4 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC26.9■■□□□ 1.9
Usp40Q8BWR4 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC26.9■■□□□ 1.9
Usp40Q8BWR4 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Usp40Q8BWR4 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Usp40Q8BWR4 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC26.9■■□□□ 1.9
Usp40Q8BWR4 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC26.89■■□□□ 1.9
Usp40Q8BWR4 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Usp40Q8BWR4 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC26.89■■□□□ 1.9
Usp40Q8BWR4 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC26.89■■□□□ 1.9
Usp40Q8BWR4 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC26.89■■□□□ 1.9
Usp40Q8BWR4 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
Usp40Q8BWR4 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Usp40Q8BWR4 Gm6802-201ENSMUST00000167843 1983 ntBASIC26.88■■□□□ 1.89
Usp40Q8BWR4 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
Usp40Q8BWR4 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC26.88■■□□□ 1.89
Usp40Q8BWR4 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Usp40Q8BWR4 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Usp40Q8BWR4 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC26.88■■□□□ 1.89
Usp40Q8BWR4 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Usp40Q8BWR4 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC26.88■■□□□ 1.89
Usp40Q8BWR4 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC26.88■■□□□ 1.89
Usp40Q8BWR4 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC26.87■■□□□ 1.89
Usp40Q8BWR4 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
Usp40Q8BWR4 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Usp40Q8BWR4 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC26.87■■□□□ 1.89
Usp40Q8BWR4 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC26.87■■□□□ 1.89
Usp40Q8BWR4 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Usp40Q8BWR4 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
Usp40Q8BWR4 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Usp40Q8BWR4 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Usp40Q8BWR4 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Usp40Q8BWR4 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Usp40Q8BWR4 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC26.86■■□□□ 1.89
Usp40Q8BWR4 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC26.86■■□□□ 1.89
Usp40Q8BWR4 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
Usp40Q8BWR4 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
Usp40Q8BWR4 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
Usp40Q8BWR4 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC26.85■■□□□ 1.89
Usp40Q8BWR4 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC26.85■■□□□ 1.89
Usp40Q8BWR4 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
Usp40Q8BWR4 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC26.85■■□□□ 1.89
Usp40Q8BWR4 Gm13534-201ENSMUST00000121169 513 ntBASIC26.85■■□□□ 1.89
Usp40Q8BWR4 Gm12669-201ENSMUST00000122162 1009 ntBASIC26.85■■□□□ 1.89
Usp40Q8BWR4 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC26.85■■□□□ 1.89
Usp40Q8BWR4 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Usp40Q8BWR4 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Usp40Q8BWR4 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC26.84■■□□□ 1.89
Usp40Q8BWR4 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
Usp40Q8BWR4 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
Usp40Q8BWR4 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
Usp40Q8BWR4 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
Usp40Q8BWR4 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
Usp40Q8BWR4 Mir5133-201ENSMUST00000174955 77 ntBASIC26.83■■□□□ 1.89
Usp40Q8BWR4 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Usp40Q8BWR4 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Usp40Q8BWR4 Gm6420-201ENSMUST00000193885 723 ntBASIC26.82■■□□□ 1.88
Usp40Q8BWR4 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC26.82■■□□□ 1.88
Usp40Q8BWR4 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Usp40Q8BWR4 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC26.82■■□□□ 1.88
Usp40Q8BWR4 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC26.82■■□□□ 1.88
Usp40Q8BWR4 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC26.82■■□□□ 1.88
Usp40Q8BWR4 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Usp40Q8BWR4 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC26.82■■□□□ 1.88
Usp40Q8BWR4 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
Usp40Q8BWR4 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC26.81■■□□□ 1.88
Usp40Q8BWR4 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Usp40Q8BWR4 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC26.81■■□□□ 1.88
Usp40Q8BWR4 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC26.81■■□□□ 1.88
Usp40Q8BWR4 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Usp40Q8BWR4 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Usp40Q8BWR4 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC26.81■■□□□ 1.88
Usp40Q8BWR4 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Usp40Q8BWR4 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Usp40Q8BWR4 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Usp40Q8BWR4 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Usp40Q8BWR4 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Usp40Q8BWR4 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
Usp40Q8BWR4 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC26.8■■□□□ 1.88
Usp40Q8BWR4 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC26.8■■□□□ 1.88
Usp40Q8BWR4 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
Usp40Q8BWR4 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Usp40Q8BWR4 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Usp40Q8BWR4 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Usp40Q8BWR4 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Usp40Q8BWR4 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Usp40Q8BWR4 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC26.79■■□□□ 1.88
Usp40Q8BWR4 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
Usp40Q8BWR4 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC26.78■■□□□ 1.88
Usp40Q8BWR4 Gm20100-201ENSMUST00000209418 2272 ntBASIC26.78■■□□□ 1.88
Usp40Q8BWR4 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Usp40Q8BWR4 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC26.78■■□□□ 1.88
Usp40Q8BWR4 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Usp40Q8BWR4 Gm10655-201ENSMUST00000098658 1397 ntBASIC26.78■■□□□ 1.88
Usp40Q8BWR4 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Usp40Q8BWR4 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms