Protein–RNA interactions for Protein: Q8BMK4

Ckap4, Cytoskeleton-associated protein 4, mousemouse

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ckap4Q8BMK4 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ckap4Q8BMK4 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ckap4Q8BMK4 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ckap4Q8BMK4 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC18.32■□□□□ 0.52
Ckap4Q8BMK4 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC18.32■□□□□ 0.52
Ckap4Q8BMK4 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC18.32■□□□□ 0.52
Ckap4Q8BMK4 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ckap4Q8BMK4 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC18.32■□□□□ 0.52
Ckap4Q8BMK4 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ckap4Q8BMK4 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ckap4Q8BMK4 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ckap4Q8BMK4 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Ckap4Q8BMK4 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Ckap4Q8BMK4 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ckap4Q8BMK4 Gm10657-201ENSMUST00000193528 1031 ntBASIC18.31■□□□□ 0.52
Ckap4Q8BMK4 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ckap4Q8BMK4 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Ckap4Q8BMK4 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ckap4Q8BMK4 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
Ckap4Q8BMK4 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC18.3■□□□□ 0.52
Ckap4Q8BMK4 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ckap4Q8BMK4 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Ckap4Q8BMK4 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Ckap4Q8BMK4 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Ckap4Q8BMK4 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ckap4Q8BMK4 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC18.3■□□□□ 0.52
Ckap4Q8BMK4 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC18.3■□□□□ 0.52
Ckap4Q8BMK4 Gm43530-201ENSMUST00000195920 274 ntBASIC18.3■□□□□ 0.52
Ckap4Q8BMK4 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC18.3■□□□□ 0.52
Ckap4Q8BMK4 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ckap4Q8BMK4 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Ckap4Q8BMK4 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Ckap4Q8BMK4 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Ckap4Q8BMK4 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
Ckap4Q8BMK4 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ckap4Q8BMK4 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ckap4Q8BMK4 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ckap4Q8BMK4 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ckap4Q8BMK4 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Ckap4Q8BMK4 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ckap4Q8BMK4 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC18.29■□□□□ 0.52
Ckap4Q8BMK4 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC18.29■□□□□ 0.52
Ckap4Q8BMK4 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Ckap4Q8BMK4 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ckap4Q8BMK4 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 Golph3-205ENSMUST00000228671 2842 ntBASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Ckap4Q8BMK4 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ckap4Q8BMK4 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ckap4Q8BMK4 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Ckap4Q8BMK4 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ckap4Q8BMK4 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ckap4Q8BMK4 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ckap4Q8BMK4 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC18.27■□□□□ 0.52
Ckap4Q8BMK4 Mir6236-201ENSMUST00000184437 123 ntBASIC18.27■□□□□ 0.52
Ckap4Q8BMK4 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC18.27■□□□□ 0.52
Ckap4Q8BMK4 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Ckap4Q8BMK4 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.51
Ckap4Q8BMK4 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Ckap4Q8BMK4 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ckap4Q8BMK4 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC18.26■□□□□ 0.51
Ckap4Q8BMK4 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ckap4Q8BMK4 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Ckap4Q8BMK4 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ckap4Q8BMK4 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Ckap4Q8BMK4 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Ckap4Q8BMK4 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Ckap4Q8BMK4 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Ckap4Q8BMK4 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ckap4Q8BMK4 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Ckap4Q8BMK4 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Ckap4Q8BMK4 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Ckap4Q8BMK4 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Ckap4Q8BMK4 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ckap4Q8BMK4 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ckap4Q8BMK4 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ckap4Q8BMK4 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ckap4Q8BMK4 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ckap4Q8BMK4 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Ckap4Q8BMK4 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ckap4Q8BMK4 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ckap4Q8BMK4 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms