Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Clrn3Q8BHH8 Gm43137-201ENSMUST00000198052 594 ntBASIC18.17■□□□□ 0.5
Clrn3Q8BHH8 Appbp2os-202ENSMUST00000206972 447 ntBASIC18.17■□□□□ 0.5
Clrn3Q8BHH8 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Clrn3Q8BHH8 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC18.17■□□□□ 0.5
Clrn3Q8BHH8 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Clrn3Q8BHH8 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Clrn3Q8BHH8 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC18.17■□□□□ 0.5
Clrn3Q8BHH8 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC18.17■□□□□ 0.5
Clrn3Q8BHH8 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Clrn3Q8BHH8 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Clrn3Q8BHH8 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Clrn3Q8BHH8 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
Clrn3Q8BHH8 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC18.17■□□□□ 0.5
Clrn3Q8BHH8 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clrn3Q8BHH8 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clrn3Q8BHH8 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Clrn3Q8BHH8 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clrn3Q8BHH8 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC18.16■□□□□ 0.5
Clrn3Q8BHH8 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clrn3Q8BHH8 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clrn3Q8BHH8 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clrn3Q8BHH8 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC18.16■□□□□ 0.5
Clrn3Q8BHH8 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clrn3Q8BHH8 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clrn3Q8BHH8 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clrn3Q8BHH8 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC18.15■□□□□ 0.5
Clrn3Q8BHH8 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Clrn3Q8BHH8 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clrn3Q8BHH8 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Clrn3Q8BHH8 Gm7160-202ENSMUST00000188519 1027 ntBASIC18.15■□□□□ 0.5
Clrn3Q8BHH8 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clrn3Q8BHH8 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Clrn3Q8BHH8 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clrn3Q8BHH8 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clrn3Q8BHH8 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clrn3Q8BHH8 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clrn3Q8BHH8 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clrn3Q8BHH8 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
Clrn3Q8BHH8 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Clrn3Q8BHH8 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Clrn3Q8BHH8 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Clrn3Q8BHH8 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Clrn3Q8BHH8 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clrn3Q8BHH8 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Clrn3Q8BHH8 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Clrn3Q8BHH8 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clrn3Q8BHH8 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Clrn3Q8BHH8 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clrn3Q8BHH8 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Clrn3Q8BHH8 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clrn3Q8BHH8 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clrn3Q8BHH8 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clrn3Q8BHH8 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clrn3Q8BHH8 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Clrn3Q8BHH8 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clrn3Q8BHH8 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Clrn3Q8BHH8 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clrn3Q8BHH8 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Clrn3Q8BHH8 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Clrn3Q8BHH8 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Clrn3Q8BHH8 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC18.13■□□□□ 0.49
Clrn3Q8BHH8 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Clrn3Q8BHH8 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Clrn3Q8BHH8 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Clrn3Q8BHH8 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Clrn3Q8BHH8 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC18.13■□□□□ 0.49
Clrn3Q8BHH8 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clrn3Q8BHH8 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Clrn3Q8BHH8 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clrn3Q8BHH8 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Clrn3Q8BHH8 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Clrn3Q8BHH8 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Clrn3Q8BHH8 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clrn3Q8BHH8 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
Clrn3Q8BHH8 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Clrn3Q8BHH8 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Clrn3Q8BHH8 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Clrn3Q8BHH8 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC18.12■□□□□ 0.49
Clrn3Q8BHH8 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clrn3Q8BHH8 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clrn3Q8BHH8 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clrn3Q8BHH8 Gm43909-201ENSMUST00000203443 1876 ntBASIC18.12■□□□□ 0.49
Clrn3Q8BHH8 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clrn3Q8BHH8 Gm42900-201ENSMUST00000197184 2167 ntBASIC18.11■□□□□ 0.49
Clrn3Q8BHH8 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Clrn3Q8BHH8 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clrn3Q8BHH8 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clrn3Q8BHH8 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Clrn3Q8BHH8 Spcs1-204ENSMUST00000226782 949 ntBASIC18.11■□□□□ 0.49
Clrn3Q8BHH8 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clrn3Q8BHH8 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clrn3Q8BHH8 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clrn3Q8BHH8 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clrn3Q8BHH8 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC18.11■□□□□ 0.49
Clrn3Q8BHH8 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Clrn3Q8BHH8 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clrn3Q8BHH8 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Clrn3Q8BHH8 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Clrn3Q8BHH8 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms