Protein–RNA interactions for Protein: Q6PFD9

Nup98, Nuclear pore complex protein Nup98-Nup96, mousemouse

Known RBP Predictions only

Length 1,816 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup98Q6PFD9 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Nup98Q6PFD9 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC23.3■■□□□ 1.32
Nup98Q6PFD9 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
Nup98Q6PFD9 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
Nup98Q6PFD9 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
Nup98Q6PFD9 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Nup98Q6PFD9 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC23.3■■□□□ 1.32
Nup98Q6PFD9 Gm6802-201ENSMUST00000167843 1983 ntBASIC23.29■■□□□ 1.32
Nup98Q6PFD9 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Nup98Q6PFD9 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Nup98Q6PFD9 Gm4968-201ENSMUST00000071458 858 ntBASIC23.29■■□□□ 1.32
Nup98Q6PFD9 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC23.29■■□□□ 1.32
Nup98Q6PFD9 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
Nup98Q6PFD9 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Nup98Q6PFD9 Gm7860-201ENSMUST00000121190 879 ntBASIC23.29■■□□□ 1.32
Nup98Q6PFD9 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC23.29■■□□□ 1.32
Nup98Q6PFD9 Nespas-201ENSMUST00000143738 1083 ntBASIC23.29■■□□□ 1.32
Nup98Q6PFD9 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC23.29■■□□□ 1.32
Nup98Q6PFD9 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC23.28■■□□□ 1.32
Nup98Q6PFD9 Gm10602-201ENSMUST00000098239 609 ntBASIC23.28■■□□□ 1.32
Nup98Q6PFD9 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Nup98Q6PFD9 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Nup98Q6PFD9 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Nup98Q6PFD9 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Nup98Q6PFD9 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Nup98Q6PFD9 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Nup98Q6PFD9 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
Nup98Q6PFD9 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
Nup98Q6PFD9 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Nup98Q6PFD9 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
Nup98Q6PFD9 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
Nup98Q6PFD9 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC23.26■■□□□ 1.31
Nup98Q6PFD9 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC23.26■■□□□ 1.31
Nup98Q6PFD9 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Nup98Q6PFD9 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC23.26■■□□□ 1.31
Nup98Q6PFD9 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Nup98Q6PFD9 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Nup98Q6PFD9 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Nup98Q6PFD9 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC23.25■■□□□ 1.31
Nup98Q6PFD9 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Nup98Q6PFD9 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Nup98Q6PFD9 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
Nup98Q6PFD9 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Nup98Q6PFD9 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC23.25■■□□□ 1.31
Nup98Q6PFD9 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Nup98Q6PFD9 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
Nup98Q6PFD9 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Nup98Q6PFD9 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Nup98Q6PFD9 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC23.24■■□□□ 1.31
Nup98Q6PFD9 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Nup98Q6PFD9 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Nup98Q6PFD9 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Nup98Q6PFD9 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Nup98Q6PFD9 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
Nup98Q6PFD9 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC23.24■■□□□ 1.31
Nup98Q6PFD9 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC23.24■■□□□ 1.31
Nup98Q6PFD9 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC23.24■■□□□ 1.31
Nup98Q6PFD9 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC23.24■■□□□ 1.31
Nup98Q6PFD9 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Nup98Q6PFD9 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Nup98Q6PFD9 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Nup98Q6PFD9 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
Nup98Q6PFD9 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
Nup98Q6PFD9 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Nup98Q6PFD9 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
Nup98Q6PFD9 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Nup98Q6PFD9 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Nup98Q6PFD9 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Nup98Q6PFD9 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC23.22■■□□□ 1.31
Nup98Q6PFD9 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Nup98Q6PFD9 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Nup98Q6PFD9 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
Nup98Q6PFD9 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Nup98Q6PFD9 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Nup98Q6PFD9 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC23.22■■□□□ 1.31
Nup98Q6PFD9 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC23.22■■□□□ 1.31
Nup98Q6PFD9 AC112142.1-201ENSMUST00000228796 918 ntBASIC23.22■■□□□ 1.31
Nup98Q6PFD9 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Nup98Q6PFD9 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Nup98Q6PFD9 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC23.21■■□□□ 1.31
Nup98Q6PFD9 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Nup98Q6PFD9 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Nup98Q6PFD9 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC23.21■■□□□ 1.31
Nup98Q6PFD9 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Nup98Q6PFD9 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Nup98Q6PFD9 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
Nup98Q6PFD9 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
Nup98Q6PFD9 Gm7290-201ENSMUST00000104990 617 ntBASIC23.2■■□□□ 1.3
Nup98Q6PFD9 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Nup98Q6PFD9 Gm12918-201ENSMUST00000120234 636 ntBASIC23.2■■□□□ 1.3
Nup98Q6PFD9 Gm15710-201ENSMUST00000121821 636 ntBASIC23.2■■□□□ 1.3
Nup98Q6PFD9 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Nup98Q6PFD9 Gm5075-201ENSMUST00000196916 622 ntBASIC23.2■■□□□ 1.3
Nup98Q6PFD9 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC23.2■■□□□ 1.3
Nup98Q6PFD9 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC23.2■■□□□ 1.3
Nup98Q6PFD9 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Nup98Q6PFD9 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Nup98Q6PFD9 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
Nup98Q6PFD9 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Nup98Q6PFD9 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms