Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Hmgb4Q6P8W9 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Hmgb4Q6P8W9 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Hmgb4Q6P8W9 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Hmgb4Q6P8W9 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Hmgb4Q6P8W9 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb4Q6P8W9 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb4Q6P8W9 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb4Q6P8W9 Gm37179-201ENSMUST00000194862 823 ntBASIC20.34■□□□□ 0.85
Hmgb4Q6P8W9 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb4Q6P8W9 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC20.34■□□□□ 0.85
Hmgb4Q6P8W9 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb4Q6P8W9 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Hmgb4Q6P8W9 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb4Q6P8W9 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb4Q6P8W9 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb4Q6P8W9 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb4Q6P8W9 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Hmgb4Q6P8W9 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Hmgb4Q6P8W9 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC20.33■□□□□ 0.85
Hmgb4Q6P8W9 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC20.33■□□□□ 0.85
Hmgb4Q6P8W9 AV356131-201ENSMUST00000206201 750 ntBASIC20.33■□□□□ 0.85
Hmgb4Q6P8W9 Gm10033-202ENSMUST00000211874 928 ntBASIC20.33■□□□□ 0.85
Hmgb4Q6P8W9 AC137127.1-201ENSMUST00000213466 1078 ntBASIC20.33■□□□□ 0.85
Hmgb4Q6P8W9 Gm9988-201ENSMUST00000069786 435 ntBASIC20.33■□□□□ 0.85
Hmgb4Q6P8W9 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC20.33■□□□□ 0.84
Hmgb4Q6P8W9 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Hmgb4Q6P8W9 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Hmgb4Q6P8W9 Gm10616-201ENSMUST00000205285 2127 ntBASIC20.33■□□□□ 0.84
Hmgb4Q6P8W9 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Hmgb4Q6P8W9 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Hmgb4Q6P8W9 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Hmgb4Q6P8W9 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC20.32■□□□□ 0.84
Hmgb4Q6P8W9 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Hmgb4Q6P8W9 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Hmgb4Q6P8W9 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Hmgb4Q6P8W9 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.32■□□□□ 0.84
Hmgb4Q6P8W9 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Hmgb4Q6P8W9 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Hmgb4Q6P8W9 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Hmgb4Q6P8W9 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Hmgb4Q6P8W9 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb4Q6P8W9 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb4Q6P8W9 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb4Q6P8W9 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb4Q6P8W9 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb4Q6P8W9 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb4Q6P8W9 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb4Q6P8W9 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb4Q6P8W9 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Hmgb4Q6P8W9 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb4Q6P8W9 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb4Q6P8W9 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb4Q6P8W9 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Hmgb4Q6P8W9 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Hmgb4Q6P8W9 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Hmgb4Q6P8W9 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC20.3■□□□□ 0.84
Hmgb4Q6P8W9 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC20.3■□□□□ 0.84
Hmgb4Q6P8W9 Gm15043-201ENSMUST00000118843 1543 ntBASIC20.3■□□□□ 0.84
Hmgb4Q6P8W9 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Hmgb4Q6P8W9 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Hmgb4Q6P8W9 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Hmgb4Q6P8W9 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Hmgb4Q6P8W9 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC20.3■□□□□ 0.84
Hmgb4Q6P8W9 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Hmgb4Q6P8W9 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Hmgb4Q6P8W9 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Hmgb4Q6P8W9 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC20.29■□□□□ 0.84
Hmgb4Q6P8W9 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Hmgb4Q6P8W9 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Hmgb4Q6P8W9 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Hmgb4Q6P8W9 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Hmgb4Q6P8W9 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Hmgb4Q6P8W9 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Hmgb4Q6P8W9 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Hmgb4Q6P8W9 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Hmgb4Q6P8W9 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
Hmgb4Q6P8W9 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC20.28■□□□□ 0.84
Hmgb4Q6P8W9 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Hmgb4Q6P8W9 Spcs1-207ENSMUST00000228767 1008 ntBASIC20.28■□□□□ 0.84
Hmgb4Q6P8W9 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.28■□□□□ 0.84
Hmgb4Q6P8W9 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Hmgb4Q6P8W9 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Hmgb4Q6P8W9 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Hmgb4Q6P8W9 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Hmgb4Q6P8W9 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Hmgb4Q6P8W9 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Hmgb4Q6P8W9 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC20.27■□□□□ 0.84
Hmgb4Q6P8W9 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Hmgb4Q6P8W9 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Hmgb4Q6P8W9 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.27■□□□□ 0.84
Hmgb4Q6P8W9 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Hmgb4Q6P8W9 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC20.26■□□□□ 0.83
Hmgb4Q6P8W9 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hmgb4Q6P8W9 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC20.26■□□□□ 0.83
Hmgb4Q6P8W9 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC20.26■□□□□ 0.83
Hmgb4Q6P8W9 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC20.26■□□□□ 0.83
Hmgb4Q6P8W9 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hmgb4Q6P8W9 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hmgb4Q6P8W9 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms