Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC21.5■■□□□ 1.03
Ift88Q61371 Gm6085-201ENSMUST00000182774 1470 ntBASIC21.5■■□□□ 1.03
Ift88Q61371 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ift88Q61371 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Ift88Q61371 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ift88Q61371 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ift88Q61371 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ift88Q61371 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ift88Q61371 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC21.49■■□□□ 1.03
Ift88Q61371 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ift88Q61371 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Ift88Q61371 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ift88Q61371 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ift88Q61371 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ift88Q61371 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ift88Q61371 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ift88Q61371 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC21.48■■□□□ 1.03
Ift88Q61371 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ift88Q61371 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC21.48■■□□□ 1.03
Ift88Q61371 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC21.48■■□□□ 1.03
Ift88Q61371 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC21.48■■□□□ 1.03
Ift88Q61371 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC21.48■■□□□ 1.03
Ift88Q61371 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ift88Q61371 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ift88Q61371 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ift88Q61371 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Ift88Q61371 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Ift88Q61371 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
Ift88Q61371 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ift88Q61371 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ift88Q61371 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC21.47■■□□□ 1.03
Ift88Q61371 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC21.47■■□□□ 1.03
Ift88Q61371 Golph3-205ENSMUST00000228671 2842 ntBASIC21.47■■□□□ 1.03
Ift88Q61371 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Ift88Q61371 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ift88Q61371 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ift88Q61371 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ift88Q61371 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ift88Q61371 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Ift88Q61371 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ift88Q61371 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Ift88Q61371 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC21.46■■□□□ 1.03
Ift88Q61371 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ift88Q61371 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
Ift88Q61371 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ift88Q61371 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ift88Q61371 Gm9959-201ENSMUST00000068277 390 ntBASIC21.46■■□□□ 1.03
Ift88Q61371 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Ift88Q61371 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ift88Q61371 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
Ift88Q61371 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ift88Q61371 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.03
Ift88Q61371 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ift88Q61371 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ift88Q61371 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
Ift88Q61371 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ift88Q61371 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Ift88Q61371 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ift88Q61371 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ift88Q61371 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Ift88Q61371 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Ift88Q61371 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC21.44■■□□□ 1.02
Ift88Q61371 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Ift88Q61371 Gm8770-201ENSMUST00000121113 1109 ntBASIC21.44■■□□□ 1.02
Ift88Q61371 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Ift88Q61371 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Ift88Q61371 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC21.44■■□□□ 1.02
Ift88Q61371 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Ift88Q61371 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ift88Q61371 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC21.44■■□□□ 1.02
Ift88Q61371 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ift88Q61371 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ift88Q61371 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ift88Q61371 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC21.43■■□□□ 1.02
Ift88Q61371 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ift88Q61371 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Ift88Q61371 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ift88Q61371 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ift88Q61371 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ift88Q61371 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ift88Q61371 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ift88Q61371 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
Ift88Q61371 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ift88Q61371 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ift88Q61371 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC21.42■■□□□ 1.02
Ift88Q61371 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC21.42■■□□□ 1.02
Ift88Q61371 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ift88Q61371 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
Ift88Q61371 Gm5784-201ENSMUST00000179344 2478 ntBASIC21.42■■□□□ 1.02
Ift88Q61371 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ift88Q61371 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ift88Q61371 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ift88Q61371 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ift88Q61371 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ift88Q61371 Gm45640-201ENSMUST00000210665 1896 ntBASIC21.41■■□□□ 1.02
Ift88Q61371 AC126028.2-201ENSMUST00000228100 1833 ntBASIC21.41■■□□□ 1.02
Ift88Q61371 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC21.41■■□□□ 1.02
Ift88Q61371 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Ift88Q61371 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ift88Q61371 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 49.8 ms