Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Trmt13-210ENSMUST00000198454 880 ntBASIC17.79■□□□□ 0.44
Usf1Q61069 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usf1Q61069 AC122769.4-201ENSMUST00000228166 901 ntBASIC17.79■□□□□ 0.44
Usf1Q61069 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usf1Q61069 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Usf1Q61069 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Usf1Q61069 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usf1Q61069 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Usf1Q61069 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usf1Q61069 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usf1Q61069 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usf1Q61069 Gm44878-201ENSMUST00000205812 1295 ntBASIC17.78■□□□□ 0.44
Usf1Q61069 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usf1Q61069 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC17.78■□□□□ 0.44
Usf1Q61069 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usf1Q61069 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usf1Q61069 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usf1Q61069 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usf1Q61069 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usf1Q61069 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usf1Q61069 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Usf1Q61069 Gm42911-201ENSMUST00000199360 1630 ntBASIC17.77■□□□□ 0.44
Usf1Q61069 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usf1Q61069 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
Usf1Q61069 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Usf1Q61069 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Usf1Q61069 Mir6982-201ENSMUST00000184354 68 ntBASIC17.77■□□□□ 0.44
Usf1Q61069 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC17.77■□□□□ 0.44
Usf1Q61069 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usf1Q61069 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usf1Q61069 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Usf1Q61069 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC17.77■□□□□ 0.43
Usf1Q61069 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Usf1Q61069 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.43
Usf1Q61069 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Usf1Q61069 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Usf1Q61069 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Usf1Q61069 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC17.76■□□□□ 0.43
Usf1Q61069 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC17.76■□□□□ 0.43
Usf1Q61069 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC17.76■□□□□ 0.43
Usf1Q61069 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usf1Q61069 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usf1Q61069 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usf1Q61069 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC17.76■□□□□ 0.43
Usf1Q61069 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Usf1Q61069 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usf1Q61069 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Usf1Q61069 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Usf1Q61069 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Usf1Q61069 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usf1Q61069 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usf1Q61069 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Usf1Q61069 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC17.75■□□□□ 0.43
Usf1Q61069 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
Usf1Q61069 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC17.75■□□□□ 0.43
Usf1Q61069 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Usf1Q61069 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usf1Q61069 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usf1Q61069 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usf1Q61069 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usf1Q61069 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Usf1Q61069 Gm44672-201ENSMUST00000206944 1098 ntBASIC17.74■□□□□ 0.43
Usf1Q61069 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Usf1Q61069 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usf1Q61069 Gm13181-201ENSMUST00000120117 1069 ntBASIC17.73■□□□□ 0.43
Usf1Q61069 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usf1Q61069 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usf1Q61069 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usf1Q61069 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usf1Q61069 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usf1Q61069 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usf1Q61069 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usf1Q61069 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usf1Q61069 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usf1Q61069 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usf1Q61069 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usf1Q61069 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC17.72■□□□□ 0.43
Usf1Q61069 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usf1Q61069 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC17.72■□□□□ 0.43
Usf1Q61069 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usf1Q61069 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usf1Q61069 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usf1Q61069 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Usf1Q61069 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usf1Q61069 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usf1Q61069 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC17.71■□□□□ 0.43
Usf1Q61069 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Usf1Q61069 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Usf1Q61069 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usf1Q61069 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usf1Q61069 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usf1Q61069 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usf1Q61069 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usf1Q61069 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Usf1Q61069 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Usf1Q61069 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Usf1Q61069 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC17.7■□□□□ 0.42
Usf1Q61069 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC17.7■□□□□ 0.42
Usf1Q61069 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usf1Q61069 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms