Protein–RNA interactions for Protein: Q08624

Hoxc4, Homeobox protein Hox-C4, mousemouse

Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxc4Q08624 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC18.82■□□□□ 0.6
Hoxc4Q08624 Ap3s1-204ENSMUST00000225520 957 ntBASIC18.82■□□□□ 0.6
Hoxc4Q08624 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hoxc4Q08624 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hoxc4Q08624 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hoxc4Q08624 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC18.82■□□□□ 0.6
Hoxc4Q08624 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hoxc4Q08624 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc4Q08624 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc4Q08624 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc4Q08624 Gm38205-201ENSMUST00000192243 258 ntBASIC18.81■□□□□ 0.6
Hoxc4Q08624 CT010467.1-202ENSMUST00000205406 714 ntBASIC18.81■□□□□ 0.6
Hoxc4Q08624 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC18.81■□□□□ 0.6
Hoxc4Q08624 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc4Q08624 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc4Q08624 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc4Q08624 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc4Q08624 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC18.8■□□□□ 0.6
Hoxc4Q08624 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hoxc4Q08624 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hoxc4Q08624 Gm12933-201ENSMUST00000120203 872 ntBASIC18.8■□□□□ 0.6
Hoxc4Q08624 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Hoxc4Q08624 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Hoxc4Q08624 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Hoxc4Q08624 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Hoxc4Q08624 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Hoxc4Q08624 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hoxc4Q08624 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hoxc4Q08624 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hoxc4Q08624 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hoxc4Q08624 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Hoxc4Q08624 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hoxc4Q08624 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC18.78■□□□□ 0.6
Hoxc4Q08624 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Hoxc4Q08624 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hoxc4Q08624 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hoxc4Q08624 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Hoxc4Q08624 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
Hoxc4Q08624 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Hoxc4Q08624 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC18.77■□□□□ 0.6
Hoxc4Q08624 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Hoxc4Q08624 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC18.77■□□□□ 0.6
Hoxc4Q08624 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hoxc4Q08624 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hoxc4Q08624 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hoxc4Q08624 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Hoxc4Q08624 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC18.77■□□□□ 0.6
Hoxc4Q08624 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hoxc4Q08624 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Hoxc4Q08624 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Hoxc4Q08624 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Hoxc4Q08624 Gm13534-201ENSMUST00000121169 513 ntBASIC18.76■□□□□ 0.59
Hoxc4Q08624 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Hoxc4Q08624 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC18.76■□□□□ 0.59
Hoxc4Q08624 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hoxc4Q08624 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hoxc4Q08624 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Hoxc4Q08624 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
Hoxc4Q08624 Gm7860-201ENSMUST00000121190 879 ntBASIC18.75■□□□□ 0.59
Hoxc4Q08624 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Hoxc4Q08624 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Hoxc4Q08624 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Hoxc4Q08624 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC18.75■□□□□ 0.59
Hoxc4Q08624 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Hoxc4Q08624 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Hoxc4Q08624 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Hoxc4Q08624 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Hoxc4Q08624 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC18.74■□□□□ 0.59
Hoxc4Q08624 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Hoxc4Q08624 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
Hoxc4Q08624 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC18.74■□□□□ 0.59
Hoxc4Q08624 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
Hoxc4Q08624 Gm29257-201ENSMUST00000186115 639 ntBASIC18.74■□□□□ 0.59
Hoxc4Q08624 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Hoxc4Q08624 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Hoxc4Q08624 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Hoxc4Q08624 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Hoxc4Q08624 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Hoxc4Q08624 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Hoxc4Q08624 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Hoxc4Q08624 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Hoxc4Q08624 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Hoxc4Q08624 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC18.73■□□□□ 0.59
Hoxc4Q08624 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Hoxc4Q08624 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
Hoxc4Q08624 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Hoxc4Q08624 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Hoxc4Q08624 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Hoxc4Q08624 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
Hoxc4Q08624 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC18.73■□□□□ 0.59
Hoxc4Q08624 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Hoxc4Q08624 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Hoxc4Q08624 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Hoxc4Q08624 Gm5297-201ENSMUST00000198555 1171 ntBASIC18.72■□□□□ 0.59
Hoxc4Q08624 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Hoxc4Q08624 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Hoxc4Q08624 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Hoxc4Q08624 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Hoxc4Q08624 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Hoxc4Q08624 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 49.9 ms