Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Col9a1Q05722 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col9a1Q05722 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC19.29■□□□□ 0.68
Col9a1Q05722 Gm17971-201ENSMUST00000190239 806 ntBASIC19.29■□□□□ 0.68
Col9a1Q05722 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Col9a1Q05722 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC19.29■□□□□ 0.68
Col9a1Q05722 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
Col9a1Q05722 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Col9a1Q05722 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
Col9a1Q05722 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC19.28■□□□□ 0.68
Col9a1Q05722 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC19.28■□□□□ 0.68
Col9a1Q05722 Gm43936-201ENSMUST00000203987 490 ntTSL 5 BASIC19.28■□□□□ 0.68
Col9a1Q05722 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col9a1Q05722 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC19.28■□□□□ 0.68
Col9a1Q05722 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Col9a1Q05722 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col9a1Q05722 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col9a1Q05722 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col9a1Q05722 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col9a1Q05722 Gm14859-201ENSMUST00000117752 357 ntBASIC19.27■□□□□ 0.68
Col9a1Q05722 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Col9a1Q05722 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col9a1Q05722 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col9a1Q05722 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Col9a1Q05722 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col9a1Q05722 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col9a1Q05722 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col9a1Q05722 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC19.27■□□□□ 0.67
Col9a1Q05722 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
Col9a1Q05722 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col9a1Q05722 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col9a1Q05722 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col9a1Q05722 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col9a1Q05722 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col9a1Q05722 Gm43514-201ENSMUST00000198852 424 ntBASIC19.26■□□□□ 0.67
Col9a1Q05722 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col9a1Q05722 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC19.26■□□□□ 0.67
Col9a1Q05722 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col9a1Q05722 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col9a1Q05722 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Col9a1Q05722 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col9a1Q05722 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
Col9a1Q05722 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col9a1Q05722 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col9a1Q05722 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC19.25■□□□□ 0.67
Col9a1Q05722 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col9a1Q05722 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col9a1Q05722 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col9a1Q05722 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col9a1Q05722 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col9a1Q05722 Gm23634-201ENSMUST00000175071 91 ntBASIC19.24■□□□□ 0.67
Col9a1Q05722 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col9a1Q05722 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col9a1Q05722 Gm37563-201ENSMUST00000192580 1513 ntBASIC19.24■□□□□ 0.67
Col9a1Q05722 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col9a1Q05722 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Col9a1Q05722 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col9a1Q05722 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col9a1Q05722 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC19.23■□□□□ 0.67
Col9a1Q05722 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC19.23■□□□□ 0.67
Col9a1Q05722 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col9a1Q05722 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Col9a1Q05722 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC19.23■□□□□ 0.67
Col9a1Q05722 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col9a1Q05722 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC19.23■□□□□ 0.67
Col9a1Q05722 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col9a1Q05722 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col9a1Q05722 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col9a1Q05722 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col9a1Q05722 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col9a1Q05722 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col9a1Q05722 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC19.22■□□□□ 0.67
Col9a1Q05722 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Col9a1Q05722 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col9a1Q05722 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col9a1Q05722 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col9a1Q05722 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col9a1Q05722 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Col9a1Q05722 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col9a1Q05722 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col9a1Q05722 Gm6345-202ENSMUST00000180900 204 ntBASIC19.21■□□□□ 0.67
Col9a1Q05722 CT010467.1-202ENSMUST00000205406 714 ntBASIC19.21■□□□□ 0.67
Col9a1Q05722 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC19.21■□□□□ 0.67
Col9a1Q05722 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col9a1Q05722 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col9a1Q05722 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col9a1Q05722 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col9a1Q05722 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col9a1Q05722 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Col9a1Q05722 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col9a1Q05722 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC19.2■□□□□ 0.66
Col9a1Q05722 Dio3-201ENSMUST00000097228 1449 ntBASIC19.2■□□□□ 0.66
Col9a1Q05722 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col9a1Q05722 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col9a1Q05722 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC19.2■□□□□ 0.66
Col9a1Q05722 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col9a1Q05722 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col9a1Q05722 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col9a1Q05722 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col9a1Q05722 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms