Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Msx3P70354 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Msx3P70354 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC19.98■□□□□ 0.79
Msx3P70354 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC19.98■□□□□ 0.79
Msx3P70354 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msx3P70354 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msx3P70354 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC19.97■□□□□ 0.79
Msx3P70354 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Msx3P70354 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Msx3P70354 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msx3P70354 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msx3P70354 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
Msx3P70354 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msx3P70354 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Msx3P70354 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msx3P70354 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msx3P70354 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Msx3P70354 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msx3P70354 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msx3P70354 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC19.96■□□□□ 0.79
Msx3P70354 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC19.96■□□□□ 0.79
Msx3P70354 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Msx3P70354 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC19.96■□□□□ 0.79
Msx3P70354 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msx3P70354 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Msx3P70354 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msx3P70354 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msx3P70354 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msx3P70354 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC19.95■□□□□ 0.78
Msx3P70354 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msx3P70354 AC140930.3-201ENSMUST00000222935 274 ntBASIC19.95■□□□□ 0.78
Msx3P70354 Spcs1-204ENSMUST00000226782 949 ntBASIC19.95■□□□□ 0.78
Msx3P70354 Serp2-204ENSMUST00000228055 705 ntBASIC19.95■□□□□ 0.78
Msx3P70354 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Msx3P70354 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msx3P70354 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Msx3P70354 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC19.94■□□□□ 0.78
Msx3P70354 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Msx3P70354 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC19.94■□□□□ 0.78
Msx3P70354 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Msx3P70354 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Msx3P70354 Gm7160-202ENSMUST00000188519 1027 ntBASIC19.94■□□□□ 0.78
Msx3P70354 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC19.94■□□□□ 0.78
Msx3P70354 Gm43137-201ENSMUST00000198052 594 ntBASIC19.94■□□□□ 0.78
Msx3P70354 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC19.94■□□□□ 0.78
Msx3P70354 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Msx3P70354 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Msx3P70354 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Msx3P70354 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Msx3P70354 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Msx3P70354 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Msx3P70354 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Msx3P70354 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Msx3P70354 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Msx3P70354 Gm42911-201ENSMUST00000199360 1630 ntBASIC19.93■□□□□ 0.78
Msx3P70354 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Msx3P70354 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Msx3P70354 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Msx3P70354 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Msx3P70354 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Msx3P70354 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Msx3P70354 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Msx3P70354 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Msx3P70354 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Msx3P70354 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Msx3P70354 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Msx3P70354 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Msx3P70354 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Msx3P70354 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Msx3P70354 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Msx3P70354 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC19.91■□□□□ 0.78
Msx3P70354 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC19.91■□□□□ 0.78
Msx3P70354 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Msx3P70354 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Msx3P70354 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
Msx3P70354 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC19.91■□□□□ 0.78
Msx3P70354 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Msx3P70354 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Msx3P70354 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Msx3P70354 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Msx3P70354 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Msx3P70354 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Msx3P70354 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Msx3P70354 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Msx3P70354 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Msx3P70354 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Msx3P70354 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC19.9■□□□□ 0.78
Msx3P70354 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Msx3P70354 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Msx3P70354 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Msx3P70354 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Msx3P70354 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Msx3P70354 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Msx3P70354 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Msx3P70354 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Msx3P70354 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Msx3P70354 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Msx3P70354 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Msx3P70354 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Msx3P70354 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 337.2 ms