Protein–RNA interactions for Protein: P40645

Sox6, Transcription factor SOX-6, mousemouse

Predictions only

Length 827 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox6P40645 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sox6P40645 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sox6P40645 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC18.17■□□□□ 0.5
Sox6P40645 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sox6P40645 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC18.17■□□□□ 0.5
Sox6P40645 Gm12922-201ENSMUST00000120626 809 ntBASIC18.17■□□□□ 0.5
Sox6P40645 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC18.17■□□□□ 0.5
Sox6P40645 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sox6P40645 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sox6P40645 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sox6P40645 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sox6P40645 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sox6P40645 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sox6P40645 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC18.16■□□□□ 0.5
Sox6P40645 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC18.16■□□□□ 0.5
Sox6P40645 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Sox6P40645 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
Sox6P40645 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sox6P40645 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Sox6P40645 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sox6P40645 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sox6P40645 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sox6P40645 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Sox6P40645 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sox6P40645 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sox6P40645 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sox6P40645 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sox6P40645 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC18.15■□□□□ 0.5
Sox6P40645 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sox6P40645 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sox6P40645 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Sox6P40645 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Sox6P40645 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sox6P40645 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sox6P40645 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Sox6P40645 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sox6P40645 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Sox6P40645 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sox6P40645 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sox6P40645 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sox6P40645 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Sox6P40645 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
Sox6P40645 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Sox6P40645 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sox6P40645 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC18.14■□□□□ 0.49
Sox6P40645 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Sox6P40645 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC18.14■□□□□ 0.49
Sox6P40645 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC18.14■□□□□ 0.49
Sox6P40645 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC18.14■□□□□ 0.49
Sox6P40645 Gm10657-201ENSMUST00000193528 1031 ntBASIC18.14■□□□□ 0.49
Sox6P40645 Gm9847-201ENSMUST00000052528 599 ntBASIC18.14■□□□□ 0.49
Sox6P40645 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Sox6P40645 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sox6P40645 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
Sox6P40645 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sox6P40645 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sox6P40645 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sox6P40645 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC18.13■□□□□ 0.49
Sox6P40645 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Sox6P40645 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sox6P40645 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sox6P40645 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sox6P40645 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sox6P40645 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Sox6P40645 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Sox6P40645 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sox6P40645 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sox6P40645 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Sox6P40645 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Sox6P40645 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox6P40645 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Sox6P40645 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Sox6P40645 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox6P40645 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox6P40645 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox6P40645 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox6P40645 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC18.12■□□□□ 0.49
Sox6P40645 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox6P40645 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC18.12■□□□□ 0.49
Sox6P40645 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox6P40645 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox6P40645 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Sox6P40645 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox6P40645 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Sox6P40645 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox6P40645 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox6P40645 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox6P40645 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox6P40645 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sox6P40645 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Sox6P40645 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Sox6P40645 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Sox6P40645 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sox6P40645 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Sox6P40645 Golgb1-201ENSMUST00000023534 498 ntBASIC18.11■□□□□ 0.49
Sox6P40645 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC18.11■□□□□ 0.49
Sox6P40645 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sox6P40645 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Sox6P40645 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sox6P40645 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms