Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Cdx1P18111 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Cdx1P18111 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Cdx1P18111 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Cdx1P18111 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC15.58■□□□□ 0.08
Cdx1P18111 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Cdx1P18111 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx1P18111 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx1P18111 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx1P18111 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
Cdx1P18111 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx1P18111 AC164883.3-201ENSMUST00000227396 1774 ntBASIC15.57■□□□□ 0.08
Cdx1P18111 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx1P18111 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Cdx1P18111 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC15.57■□□□□ 0.08
Cdx1P18111 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx1P18111 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx1P18111 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx1P18111 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx1P18111 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx1P18111 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC15.57■□□□□ 0.08
Cdx1P18111 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx1P18111 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx1P18111 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC15.57■□□□□ 0.08
Cdx1P18111 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC15.57■□□□□ 0.08
Cdx1P18111 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC15.57■□□□□ 0.08
Cdx1P18111 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
Cdx1P18111 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx1P18111 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx1P18111 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx1P18111 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx1P18111 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Cdx1P18111 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx1P18111 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx1P18111 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC15.56■□□□□ 0.08
Cdx1P18111 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx1P18111 Gm28536-201ENSMUST00000190971 1317 ntBASIC15.56■□□□□ 0.08
Cdx1P18111 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx1P18111 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx1P18111 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Cdx1P18111 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx1P18111 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx1P18111 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC15.56■□□□□ 0.08
Cdx1P18111 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx1P18111 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx1P18111 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx1P18111 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx1P18111 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx1P18111 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx1P18111 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx1P18111 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx1P18111 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC15.55■□□□□ 0.08
Cdx1P18111 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx1P18111 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx1P18111 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
Cdx1P18111 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Cdx1P18111 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx1P18111 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx1P18111 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx1P18111 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx1P18111 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Cdx1P18111 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx1P18111 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx1P18111 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC15.55■□□□□ 0.08
Cdx1P18111 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx1P18111 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx1P18111 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Cdx1P18111 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx1P18111 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Cdx1P18111 Dapk1-207ENSMUST00000226059 5009 ntBASIC15.54■□□□□ 0.08
Cdx1P18111 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdx1P18111 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdx1P18111 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdx1P18111 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdx1P18111 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdx1P18111 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdx1P18111 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
Cdx1P18111 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC15.54■□□□□ 0.08
Cdx1P18111 Gm13241-201ENSMUST00000094493 780 ntBASIC15.54■□□□□ 0.08
Cdx1P18111 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdx1P18111 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdx1P18111 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Cdx1P18111 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdx1P18111 AC158990.1-201ENSMUST00000221450 2016 ntBASIC15.53■□□□□ 0.08
Cdx1P18111 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdx1P18111 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdx1P18111 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdx1P18111 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Cdx1P18111 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdx1P18111 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC15.53■□□□□ 0.08
Cdx1P18111 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC15.53■□□□□ 0.08
Cdx1P18111 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Cdx1P18111 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
Cdx1P18111 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdx1P18111 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdx1P18111 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Cdx1P18111 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdx1P18111 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdx1P18111 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Cdx1P18111 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms