Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
Pcdha4O88689 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC21.81■■□□□ 1.08
Pcdha4O88689 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
Pcdha4O88689 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Pcdha4O88689 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Pcdha4O88689 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Pcdha4O88689 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Pcdha4O88689 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Pcdha4O88689 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC21.8■■□□□ 1.08
Pcdha4O88689 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC21.8■■□□□ 1.08
Pcdha4O88689 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Pcdha4O88689 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Pcdha4O88689 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC21.8■■□□□ 1.08
Pcdha4O88689 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Pcdha4O88689 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
Pcdha4O88689 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Pcdha4O88689 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
Pcdha4O88689 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC21.79■■□□□ 1.08
Pcdha4O88689 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
Pcdha4O88689 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Pcdha4O88689 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Pcdha4O88689 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Pcdha4O88689 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Pcdha4O88689 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Pcdha4O88689 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Pcdha4O88689 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Pcdha4O88689 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Pcdha4O88689 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Pcdha4O88689 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Pcdha4O88689 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Pcdha4O88689 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Pcdha4O88689 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC21.78■■□□□ 1.08
Pcdha4O88689 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC21.78■■□□□ 1.08
Pcdha4O88689 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Pcdha4O88689 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Pcdha4O88689 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Pcdha4O88689 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Pcdha4O88689 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Pcdha4O88689 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Pcdha4O88689 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC21.77■■□□□ 1.08
Pcdha4O88689 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC21.77■■□□□ 1.08
Pcdha4O88689 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Pcdha4O88689 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Pcdha4O88689 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Pcdha4O88689 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Pcdha4O88689 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Pcdha4O88689 Gm20100-201ENSMUST00000209418 2272 ntBASIC21.77■■□□□ 1.08
Pcdha4O88689 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Pcdha4O88689 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
Pcdha4O88689 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Pcdha4O88689 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Pcdha4O88689 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC21.76■■□□□ 1.07
Pcdha4O88689 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Pcdha4O88689 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Pcdha4O88689 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
Pcdha4O88689 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
Pcdha4O88689 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Pcdha4O88689 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Pcdha4O88689 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC21.75■■□□□ 1.07
Pcdha4O88689 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
Pcdha4O88689 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Pcdha4O88689 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Pcdha4O88689 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Pcdha4O88689 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Pcdha4O88689 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Pcdha4O88689 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC21.74■■□□□ 1.07
Pcdha4O88689 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Pcdha4O88689 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Pcdha4O88689 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Pcdha4O88689 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC21.74■■□□□ 1.07
Pcdha4O88689 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Pcdha4O88689 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Pcdha4O88689 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Pcdha4O88689 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Pcdha4O88689 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Pcdha4O88689 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Pcdha4O88689 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Pcdha4O88689 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Pcdha4O88689 Gm14281-201ENSMUST00000121700 1294 ntBASIC21.73■■□□□ 1.07
Pcdha4O88689 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC21.73■■□□□ 1.07
Pcdha4O88689 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Pcdha4O88689 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Pcdha4O88689 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Pcdha4O88689 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Pcdha4O88689 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Pcdha4O88689 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Pcdha4O88689 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Pcdha4O88689 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Pcdha4O88689 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC21.72■■□□□ 1.07
Pcdha4O88689 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
Pcdha4O88689 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Pcdha4O88689 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Pcdha4O88689 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Pcdha4O88689 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Pcdha4O88689 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Pcdha4O88689 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Pcdha4O88689 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC21.71■■□□□ 1.07
Pcdha4O88689 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC21.71■■□□□ 1.07
Pcdha4O88689 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Pcdha4O88689 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms