Protein–RNA interactions for Protein: O35235

Tnfsf11, Tumor necrosis factor ligand superfamily member 11, mousemouse

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf11O35235 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC15.16■□□□□ 0.02
Tnfsf11O35235 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Tnfsf11O35235 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Tnfsf11O35235 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC15.16■□□□□ 0.02
Tnfsf11O35235 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Tnfsf11O35235 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Tnfsf11O35235 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Tnfsf11O35235 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Tnfsf11O35235 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Tnfsf11O35235 Gm10620-201ENSMUST00000098379 1332 ntBASIC15.16■□□□□ 0.02
Tnfsf11O35235 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Tnfsf11O35235 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Tnfsf11O35235 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Tnfsf11O35235 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Tnfsf11O35235 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Tnfsf11O35235 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Tnfsf11O35235 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
Tnfsf11O35235 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Tnfsf11O35235 Gm5067-201ENSMUST00000170449 1009 ntBASIC15.15■□□□□ 0.02
Tnfsf11O35235 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Tnfsf11O35235 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC15.15■□□□□ 0.02
Tnfsf11O35235 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Tnfsf11O35235 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Tnfsf11O35235 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Tnfsf11O35235 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Tnfsf11O35235 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Tnfsf11O35235 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Tnfsf11O35235 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Tnfsf11O35235 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Tnfsf11O35235 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC15.14■□□□□ 0.01
Tnfsf11O35235 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Tnfsf11O35235 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Tnfsf11O35235 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Tnfsf11O35235 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Tnfsf11O35235 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Tnfsf11O35235 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Tnfsf11O35235 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Tnfsf11O35235 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Tnfsf11O35235 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Tnfsf11O35235 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Tnfsf11O35235 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Tnfsf11O35235 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Tnfsf11O35235 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Tnfsf11O35235 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Tnfsf11O35235 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Tnfsf11O35235 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Tnfsf11O35235 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Tnfsf11O35235 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Tnfsf11O35235 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Tnfsf11O35235 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Tnfsf11O35235 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Tnfsf11O35235 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Tnfsf11O35235 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Tnfsf11O35235 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Tnfsf11O35235 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Tnfsf11O35235 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Tnfsf11O35235 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC15.12■□□□□ 0.01
Tnfsf11O35235 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC15.12■□□□□ 0.01
Tnfsf11O35235 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Tnfsf11O35235 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Tnfsf11O35235 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Tnfsf11O35235 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Tnfsf11O35235 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Tnfsf11O35235 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Tnfsf11O35235 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Tnfsf11O35235 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC15.12■□□□□ 0.01
Tnfsf11O35235 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Tnfsf11O35235 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC15.11■□□□□ 0.01
Tnfsf11O35235 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Tnfsf11O35235 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Tnfsf11O35235 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Tnfsf11O35235 Gm5953-201ENSMUST00000220644 2616 ntBASIC15.11■□□□□ 0.01
Tnfsf11O35235 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Tnfsf11O35235 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC15.11■□□□□ 0.01
Tnfsf11O35235 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Tnfsf11O35235 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Tnfsf11O35235 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Tnfsf11O35235 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Tnfsf11O35235 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Tnfsf11O35235 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Tnfsf11O35235 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Tnfsf11O35235 Gm6627-201ENSMUST00000218299 2386 ntBASIC15.11■□□□□ 0.01
Tnfsf11O35235 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Tnfsf11O35235 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Tnfsf11O35235 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Tnfsf11O35235 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
Tnfsf11O35235 Grk6-206ENSMUST00000224995 2971 ntBASIC15.1■□□□□ 0.01
Tnfsf11O35235 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Tnfsf11O35235 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Tnfsf11O35235 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Tnfsf11O35235 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
Tnfsf11O35235 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Tnfsf11O35235 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Tnfsf11O35235 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC15.1■□□□□ 0.01
Tnfsf11O35235 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Tnfsf11O35235 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Tnfsf11O35235 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Tnfsf11O35235 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Tnfsf11O35235 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Tnfsf11O35235 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 14.5 ms