Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
Hmgb3O54879 Cat-201ENSMUST00000028610 2613 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
Hmgb3O54879 Rc3h2-203ENSMUST00000112936 5828 ntAPPRIS P1 TSL 5 BASIC7.92□□□□□ -1.14
Hmgb3O54879 Zbtb43-202ENSMUST00000095035 4925 ntTSL 5 BASIC7.92□□□□□ -1.14
Hmgb3O54879 Taf8-201ENSMUST00000067103 2779 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
Hmgb3O54879 Sla2-201ENSMUST00000029164 2973 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
Hmgb3O54879 Ces1c-201ENSMUST00000034189 1828 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
Hmgb3O54879 Pcdhb7-201ENSMUST00000053037 3501 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
Hmgb3O54879 Pkd2l2-202ENSMUST00000166156 2132 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Gm45718-201ENSMUST00000207577 3794 ntBASIC7.91□□□□□ -1.14
Hmgb3O54879 Kpna7-201ENSMUST00000110672 2262 ntAPPRIS P3 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 AC168276.1-201ENSMUST00000218963 2385 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Atp7b-202ENSMUST00000110738 4044 ntAPPRIS ALT2 TSL 5 BASIC7.91□□□□□ -1.14
Hmgb3O54879 Alox15-201ENSMUST00000019068 2409 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Slc7a8-201ENSMUST00000022787 4084 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Fmo5-201ENSMUST00000029729 2453 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Gramd4-201ENSMUST00000088931 4115 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Adamts6-203ENSMUST00000224208 6480 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
Hmgb3O54879 AA986860-201ENSMUST00000039323 2909 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Retsat-201ENSMUST00000070597 3027 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Pik3r3-201ENSMUST00000030464 5257 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Zc3hav1-204ENSMUST00000143702 3364 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Gstm6-204ENSMUST00000106684 1179 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Gm11331-201ENSMUST00000119764 288 ntBASIC7.91□□□□□ -1.14
Hmgb3O54879 Tbata-203ENSMUST00000121297 1000 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Gm16459-201ENSMUST00000121443 686 ntBASIC7.91□□□□□ -1.14
Hmgb3O54879 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC7.91□□□□□ -1.14
Hmgb3O54879 Gm15911-201ENSMUST00000138992 809 ntTSL 3 BASIC7.91□□□□□ -1.14
Hmgb3O54879 Gm38389-201ENSMUST00000147871 653 ntTSL 3 BASIC7.91□□□□□ -1.14
Hmgb3O54879 Pkib-204ENSMUST00000175852 731 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Mir6420-201ENSMUST00000185032 102 ntBASIC7.91□□□□□ -1.14
Hmgb3O54879 1700025F24Rik-201ENSMUST00000185238 894 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Gm28388-201ENSMUST00000186262 437 ntBASIC7.91□□□□□ -1.14
Hmgb3O54879 Gm37885-202ENSMUST00000195868 685 ntTSL 3 BASIC7.91□□□□□ -1.14
Hmgb3O54879 Gm7082-201ENSMUST00000209880 969 ntBASIC7.91□□□□□ -1.14
Hmgb3O54879 Gm45594-201ENSMUST00000211717 241 ntBASIC7.91□□□□□ -1.14
Hmgb3O54879 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 AC100406.1-201ENSMUST00000217305 480 ntBASIC7.91□□□□□ -1.14
Hmgb3O54879 AC165154.1-201ENSMUST00000226661 340 ntBASIC7.91□□□□□ -1.14
Hmgb3O54879 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Calm4-201ENSMUST00000042219 917 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
Hmgb3O54879 Ifne-201ENSMUST00000056014 664 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
Hmgb3O54879 Rnf181-202ENSMUST00000069595 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Car8-201ENSMUST00000066674 3853 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Gm8848-201ENSMUST00000197270 1343 ntBASIC7.91□□□□□ -1.14
Hmgb3O54879 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Mocs2-216ENSMUST00000184672 1447 ntAPPRIS P1 TSL 5 BASIC7.91□□□□□ -1.14
Hmgb3O54879 Gm10344-201ENSMUST00000193498 1419 ntBASIC7.91□□□□□ -1.14
Hmgb3O54879 Fam19a3-201ENSMUST00000139783 4316 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Als2cr12-206ENSMUST00000191565 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Iyd-201ENSMUST00000019896 1579 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Mmp27-202ENSMUST00000151853 1673 ntAPPRIS ALT2 TSL 5 BASIC7.91□□□□□ -1.14
Hmgb3O54879 Map3k7-203ENSMUST00000108183 5416 ntTSL 5 BASIC7.91□□□□□ -1.14
Hmgb3O54879 A630012P03Rik-202ENSMUST00000114854 1974 ntTSL 5 BASIC7.91□□□□□ -1.14
Hmgb3O54879 A730018C14Rik-201ENSMUST00000050754 2253 ntTSL 2 BASIC7.91□□□□□ -1.14
Hmgb3O54879 Smok3c-201ENSMUST00000110967 2330 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Wdr95-201ENSMUST00000110502 2482 ntTSL 5 BASIC7.91□□□□□ -1.14
Hmgb3O54879 Gm30414-201ENSMUST00000194886 2596 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Washc5-202ENSMUST00000227725 2618 ntBASIC7.91□□□□□ -1.14
Hmgb3O54879 4931431C16Rik-201ENSMUST00000124643 2735 ntTSL 2 BASIC7.91□□□□□ -1.14
Hmgb3O54879 Syt17-201ENSMUST00000081574 2764 ntAPPRIS P2 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Tmem19-209ENSMUST00000219890 2949 ntTSL 5 BASIC7.91□□□□□ -1.14
Hmgb3O54879 C330007P06Rik-202ENSMUST00000115248 3340 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Ccdc120-201ENSMUST00000033490 3658 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Akap1-202ENSMUST00000107903 3721 ntAPPRIS P2 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Dcaf1-201ENSMUST00000055009 4967 ntAPPRIS P1 TSL 5 BASIC7.91□□□□□ -1.14
Hmgb3O54879 Naip1-204ENSMUST00000222155 5361 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Shprh-203ENSMUST00000159541 6679 ntAPPRIS ALT2 TSL 1 (best) BASIC7.91□□□□□ -1.14
Hmgb3O54879 Abcc12-201ENSMUST00000080115 4511 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
Hmgb3O54879 Slc4a2-203ENSMUST00000115049 3924 ntAPPRIS ALT2 TSL 5 BASIC7.9□□□□□ -1.14
Hmgb3O54879 Gm37813-201ENSMUST00000195003 3695 ntBASIC7.9□□□□□ -1.14
Hmgb3O54879 Zfp385b-201ENSMUST00000090766 2740 ntAPPRIS P3 TSL 1 (best) BASIC7.9□□□□□ -1.14
Hmgb3O54879 Bag3-201ENSMUST00000033136 2562 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
Hmgb3O54879 1700001J11Rik-202ENSMUST00000190330 2463 ntBASIC7.9□□□□□ -1.14
Hmgb3O54879 Slc25a45-201ENSMUST00000025732 2480 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
Hmgb3O54879 AC160413.2-201ENSMUST00000217790 2280 ntBASIC7.9□□□□□ -1.14
Hmgb3O54879 Gm38215-201ENSMUST00000192321 2233 ntBASIC7.9□□□□□ -1.14
Hmgb3O54879 C2cd3-202ENSMUST00000098259 6602 ntAPPRIS ALT2 TSL 5 BASIC7.9□□□□□ -1.14
Hmgb3O54879 Mpp5-201ENSMUST00000082024 5470 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
Hmgb3O54879 Itch-202ENSMUST00000109685 5309 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
Hmgb3O54879 Hgd-203ENSMUST00000160847 1702 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
Hmgb3O54879 Olfml1-201ENSMUST00000120990 1685 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
Hmgb3O54879 Trp63-201ENSMUST00000040231 4703 ntAPPRIS P3 TSL 1 (best) BASIC7.9□□□□□ -1.14
Hmgb3O54879 Ltn1-201ENSMUST00000039449 7737 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
Hmgb3O54879 6030469F06Rik-202ENSMUST00000218473 1537 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
Hmgb3O54879 AC238811.2-201ENSMUST00000224554 1509 ntBASIC7.9□□□□□ -1.14
Hmgb3O54879 Cntnap2-201ENSMUST00000060839 1540 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
Hmgb3O54879 A1cf-204ENSMUST00000224564 1432 ntBASIC7.9□□□□□ -1.14
Hmgb3O54879 Gm9260-201ENSMUST00000199781 1380 ntBASIC7.9□□□□□ -1.14
Hmgb3O54879 Tpm1-205ENSMUST00000113685 1208 ntAPPRIS P2 TSL 1 (best) BASIC7.9□□□□□ -1.14
Hmgb3O54879 Gm13171-201ENSMUST00000117233 391 ntBASIC7.9□□□□□ -1.14
Hmgb3O54879 Gm8754-201ENSMUST00000118391 520 ntBASIC7.9□□□□□ -1.14
Hmgb3O54879 Gm12566-201ENSMUST00000121479 359 ntBASIC7.9□□□□□ -1.14
Hmgb3O54879 Gm12030-201ENSMUST00000121917 223 ntBASIC7.9□□□□□ -1.14
Hmgb3O54879 n-R5s175-201ENSMUST00000122599 117 ntBASIC7.9□□□□□ -1.14
Hmgb3O54879 Mir1905-201ENSMUST00000122779 82 ntBASIC7.9□□□□□ -1.14
Hmgb3O54879 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC7.9□□□□□ -1.14
Hmgb3O54879 Gm13802-201ENSMUST00000150159 663 ntTSL 3 BASIC7.9□□□□□ -1.14
Hmgb3O54879 Gm4778-202ENSMUST00000159517 1241 ntAPPRIS P1 TSL 5 BASIC7.9□□□□□ -1.14
Hmgb3O54879 Gm15744-201ENSMUST00000161734 213 ntBASIC7.9□□□□□ -1.14
Retrieved 100 of 76,532 protein–RNA pairs in 70.2 ms