Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Scn11aQ9R053 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Scn11aQ9R053 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Scn11aQ9R053 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Scn11aQ9R053 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Scn11aQ9R053 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
Scn11aQ9R053 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
Scn11aQ9R053 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC23.59■■□□□ 1.37
Scn11aQ9R053 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Scn11aQ9R053 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Scn11aQ9R053 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
Scn11aQ9R053 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Scn11aQ9R053 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Scn11aQ9R053 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Scn11aQ9R053 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC23.58■■□□□ 1.37
Scn11aQ9R053 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
Scn11aQ9R053 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
Scn11aQ9R053 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.36
Scn11aQ9R053 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Scn11aQ9R053 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC23.57■■□□□ 1.36
Scn11aQ9R053 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
Scn11aQ9R053 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
Scn11aQ9R053 Gm38205-201ENSMUST00000192243 258 ntBASIC23.57■■□□□ 1.36
Scn11aQ9R053 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
Scn11aQ9R053 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Scn11aQ9R053 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Scn11aQ9R053 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
Scn11aQ9R053 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC23.56■■□□□ 1.36
Scn11aQ9R053 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Scn11aQ9R053 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Scn11aQ9R053 AA386476-201ENSMUST00000098781 1665 ntBASIC23.56■■□□□ 1.36
Scn11aQ9R053 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Scn11aQ9R053 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC23.56■■□□□ 1.36
Scn11aQ9R053 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC23.55■■□□□ 1.36
Scn11aQ9R053 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
Scn11aQ9R053 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Scn11aQ9R053 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC23.55■■□□□ 1.36
Scn11aQ9R053 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Scn11aQ9R053 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Scn11aQ9R053 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Scn11aQ9R053 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Scn11aQ9R053 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Scn11aQ9R053 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Scn11aQ9R053 Gm43006-201ENSMUST00000197702 1602 ntBASIC23.55■■□□□ 1.36
Scn11aQ9R053 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
Scn11aQ9R053 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Scn11aQ9R053 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC23.54■■□□□ 1.36
Scn11aQ9R053 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Scn11aQ9R053 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC23.54■■□□□ 1.36
Scn11aQ9R053 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
Scn11aQ9R053 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC23.53■■□□□ 1.36
Scn11aQ9R053 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC23.53■■□□□ 1.36
Scn11aQ9R053 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
Scn11aQ9R053 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Scn11aQ9R053 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Scn11aQ9R053 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
Scn11aQ9R053 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
Scn11aQ9R053 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
Scn11aQ9R053 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
Scn11aQ9R053 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Scn11aQ9R053 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC23.52■■□□□ 1.36
Scn11aQ9R053 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC23.52■■□□□ 1.36
Scn11aQ9R053 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC23.51■■□□□ 1.35
Scn11aQ9R053 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Scn11aQ9R053 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Scn11aQ9R053 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Scn11aQ9R053 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Scn11aQ9R053 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Scn11aQ9R053 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
Scn11aQ9R053 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Scn11aQ9R053 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Scn11aQ9R053 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Scn11aQ9R053 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Scn11aQ9R053 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
Scn11aQ9R053 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Scn11aQ9R053 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
Scn11aQ9R053 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
Scn11aQ9R053 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC23.48■■□□□ 1.35
Scn11aQ9R053 Gm13148-201ENSMUST00000118892 745 ntBASIC23.48■■□□□ 1.35
Scn11aQ9R053 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC23.48■■□□□ 1.35
Scn11aQ9R053 AC158538.1-201ENSMUST00000225870 294 ntBASIC23.48■■□□□ 1.35
Scn11aQ9R053 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC23.48■■□□□ 1.35
Scn11aQ9R053 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC23.47■■□□□ 1.35
Scn11aQ9R053 Gm7514-201ENSMUST00000209475 934 ntBASIC23.47■■□□□ 1.35
Scn11aQ9R053 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Scn11aQ9R053 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC23.47■■□□□ 1.35
Scn11aQ9R053 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Scn11aQ9R053 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Scn11aQ9R053 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC23.47■■□□□ 1.35
Scn11aQ9R053 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC23.47■■□□□ 1.35
Scn11aQ9R053 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Scn11aQ9R053 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC23.47■■□□□ 1.35
Scn11aQ9R053 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC23.47■■□□□ 1.35
Scn11aQ9R053 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC23.47■■□□□ 1.35
Scn11aQ9R053 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC23.47■■□□□ 1.35
Scn11aQ9R053 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Scn11aQ9R053 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC23.46■■□□□ 1.35
Scn11aQ9R053 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC23.46■■□□□ 1.35
Scn11aQ9R053 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.34
Scn11aQ9R053 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC23.45■■□□□ 1.34
Retrieved 100 of 76,532 protein–RNA pairs in 15.9 ms