Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
Cpsf1Q9EPU4 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC27.34■■□□□ 1.97
Cpsf1Q9EPU4 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC27.34■■□□□ 1.97
Cpsf1Q9EPU4 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC27.34■■□□□ 1.97
Cpsf1Q9EPU4 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC27.34■■□□□ 1.97
Cpsf1Q9EPU4 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC27.33■■□□□ 1.97
Cpsf1Q9EPU4 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Cpsf1Q9EPU4 Reep4-203ENSMUST00000226563 1444 ntBASIC27.33■■□□□ 1.97
Cpsf1Q9EPU4 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC27.33■■□□□ 1.97
Cpsf1Q9EPU4 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
Cpsf1Q9EPU4 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC27.33■■□□□ 1.97
Cpsf1Q9EPU4 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.96
Cpsf1Q9EPU4 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.96
Cpsf1Q9EPU4 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.96
Cpsf1Q9EPU4 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Cpsf1Q9EPU4 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Cpsf1Q9EPU4 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Cpsf1Q9EPU4 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC27.32■■□□□ 1.96
Cpsf1Q9EPU4 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
Cpsf1Q9EPU4 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
Cpsf1Q9EPU4 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC27.32■■□□□ 1.96
Cpsf1Q9EPU4 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
Cpsf1Q9EPU4 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC27.32■■□□□ 1.96
Cpsf1Q9EPU4 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Cpsf1Q9EPU4 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Cpsf1Q9EPU4 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
Cpsf1Q9EPU4 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Cpsf1Q9EPU4 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC27.31■■□□□ 1.96
Cpsf1Q9EPU4 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Cpsf1Q9EPU4 Gm13146-201ENSMUST00000118508 780 ntBASIC27.3■■□□□ 1.96
Cpsf1Q9EPU4 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC27.3■■□□□ 1.96
Cpsf1Q9EPU4 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
Cpsf1Q9EPU4 CT010467.1-202ENSMUST00000205406 714 ntBASIC27.3■■□□□ 1.96
Cpsf1Q9EPU4 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC27.3■■□□□ 1.96
Cpsf1Q9EPU4 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC27.3■■□□□ 1.96
Cpsf1Q9EPU4 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Cpsf1Q9EPU4 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
Cpsf1Q9EPU4 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
Cpsf1Q9EPU4 Gm13234-201ENSMUST00000120010 747 ntBASIC27.29■■□□□ 1.96
Cpsf1Q9EPU4 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC27.29■■□□□ 1.96
Cpsf1Q9EPU4 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC27.29■■□□□ 1.96
Cpsf1Q9EPU4 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
Cpsf1Q9EPU4 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Cpsf1Q9EPU4 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Cpsf1Q9EPU4 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Cpsf1Q9EPU4 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Cpsf1Q9EPU4 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Cpsf1Q9EPU4 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC27.29■■□□□ 1.96
Cpsf1Q9EPU4 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
Cpsf1Q9EPU4 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Cpsf1Q9EPU4 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Cpsf1Q9EPU4 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
Cpsf1Q9EPU4 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC27.28■■□□□ 1.96
Cpsf1Q9EPU4 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Cpsf1Q9EPU4 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
Cpsf1Q9EPU4 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
Cpsf1Q9EPU4 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Cpsf1Q9EPU4 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Cpsf1Q9EPU4 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Cpsf1Q9EPU4 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC27.27■■□□□ 1.96
Cpsf1Q9EPU4 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC27.27■■□□□ 1.96
Cpsf1Q9EPU4 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
Cpsf1Q9EPU4 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Cpsf1Q9EPU4 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
Cpsf1Q9EPU4 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC27.26■■□□□ 1.95
Cpsf1Q9EPU4 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Cpsf1Q9EPU4 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Cpsf1Q9EPU4 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
Cpsf1Q9EPU4 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
Cpsf1Q9EPU4 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
Cpsf1Q9EPU4 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
Cpsf1Q9EPU4 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Cpsf1Q9EPU4 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
Cpsf1Q9EPU4 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
Cpsf1Q9EPU4 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
Cpsf1Q9EPU4 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
Cpsf1Q9EPU4 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC27.24■■□□□ 1.95
Cpsf1Q9EPU4 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
Cpsf1Q9EPU4 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
Cpsf1Q9EPU4 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC27.24■■□□□ 1.95
Cpsf1Q9EPU4 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC27.23■■□□□ 1.95
Cpsf1Q9EPU4 Gm20100-201ENSMUST00000209418 2272 ntBASIC27.23■■□□□ 1.95
Cpsf1Q9EPU4 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC27.23■■□□□ 1.95
Cpsf1Q9EPU4 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Cpsf1Q9EPU4 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC27.23■■□□□ 1.95
Cpsf1Q9EPU4 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC27.23■■□□□ 1.95
Cpsf1Q9EPU4 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC27.22■■□□□ 1.95
Cpsf1Q9EPU4 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC27.22■■□□□ 1.95
Cpsf1Q9EPU4 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
Cpsf1Q9EPU4 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC27.22■■□□□ 1.95
Cpsf1Q9EPU4 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
Cpsf1Q9EPU4 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Cpsf1Q9EPU4 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC27.22■■□□□ 1.95
Cpsf1Q9EPU4 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
Cpsf1Q9EPU4 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Cpsf1Q9EPU4 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
Cpsf1Q9EPU4 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
Cpsf1Q9EPU4 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Cpsf1Q9EPU4 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Cpsf1Q9EPU4 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms