Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trub1Q8C0D0 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC20.21■□□□□ 0.83
Trub1Q8C0D0 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trub1Q8C0D0 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.21■□□□□ 0.83
Trub1Q8C0D0 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
Trub1Q8C0D0 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trub1Q8C0D0 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trub1Q8C0D0 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
Trub1Q8C0D0 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trub1Q8C0D0 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trub1Q8C0D0 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trub1Q8C0D0 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trub1Q8C0D0 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC20.2■□□□□ 0.82
Trub1Q8C0D0 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Trub1Q8C0D0 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC20.2■□□□□ 0.82
Trub1Q8C0D0 Spcs1-204ENSMUST00000226782 949 ntBASIC20.2■□□□□ 0.82
Trub1Q8C0D0 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Trub1Q8C0D0 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Trub1Q8C0D0 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Trub1Q8C0D0 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Trub1Q8C0D0 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Trub1Q8C0D0 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trub1Q8C0D0 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trub1Q8C0D0 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trub1Q8C0D0 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trub1Q8C0D0 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trub1Q8C0D0 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trub1Q8C0D0 Gm12251-201ENSMUST00000117893 792 ntBASIC20.18■□□□□ 0.82
Trub1Q8C0D0 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trub1Q8C0D0 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trub1Q8C0D0 AC154266.1-201ENSMUST00000223190 503 ntBASIC20.18■□□□□ 0.82
Trub1Q8C0D0 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Trub1Q8C0D0 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trub1Q8C0D0 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trub1Q8C0D0 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Trub1Q8C0D0 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trub1Q8C0D0 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC20.17■□□□□ 0.82
Trub1Q8C0D0 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC20.17■□□□□ 0.82
Trub1Q8C0D0 Serp2-204ENSMUST00000228055 705 ntBASIC20.17■□□□□ 0.82
Trub1Q8C0D0 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trub1Q8C0D0 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Trub1Q8C0D0 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Trub1Q8C0D0 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trub1Q8C0D0 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trub1Q8C0D0 Gm7160-202ENSMUST00000188519 1027 ntBASIC20.16■□□□□ 0.82
Trub1Q8C0D0 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC20.16■□□□□ 0.82
Trub1Q8C0D0 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC20.16■□□□□ 0.82
Trub1Q8C0D0 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.16■□□□□ 0.82
Trub1Q8C0D0 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trub1Q8C0D0 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trub1Q8C0D0 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Trub1Q8C0D0 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC20.15■□□□□ 0.82
Trub1Q8C0D0 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Trub1Q8C0D0 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trub1Q8C0D0 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trub1Q8C0D0 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trub1Q8C0D0 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Trub1Q8C0D0 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trub1Q8C0D0 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trub1Q8C0D0 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trub1Q8C0D0 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Trub1Q8C0D0 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Trub1Q8C0D0 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Trub1Q8C0D0 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
Trub1Q8C0D0 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trub1Q8C0D0 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trub1Q8C0D0 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trub1Q8C0D0 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC20.14■□□□□ 0.81
Trub1Q8C0D0 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Trub1Q8C0D0 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC20.13■□□□□ 0.81
Trub1Q8C0D0 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trub1Q8C0D0 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trub1Q8C0D0 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trub1Q8C0D0 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Trub1Q8C0D0 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trub1Q8C0D0 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trub1Q8C0D0 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trub1Q8C0D0 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC20.12■□□□□ 0.81
Trub1Q8C0D0 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Trub1Q8C0D0 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Trub1Q8C0D0 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Trub1Q8C0D0 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Trub1Q8C0D0 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trub1Q8C0D0 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trub1Q8C0D0 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Trub1Q8C0D0 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trub1Q8C0D0 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trub1Q8C0D0 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trub1Q8C0D0 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Trub1Q8C0D0 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trub1Q8C0D0 Flvcr1-202ENSMUST00000191946 1216 ntBASIC20.11■□□□□ 0.81
Trub1Q8C0D0 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trub1Q8C0D0 Gm42911-201ENSMUST00000199360 1630 ntBASIC20.11■□□□□ 0.81
Trub1Q8C0D0 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trub1Q8C0D0 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Trub1Q8C0D0 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trub1Q8C0D0 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trub1Q8C0D0 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC20.11■□□□□ 0.81
Trub1Q8C0D0 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trub1Q8C0D0 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms