Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
Ddx58Q6Q899 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
Ddx58Q6Q899 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
Ddx58Q6Q899 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
Ddx58Q6Q899 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC24.29■■□□□ 1.48
Ddx58Q6Q899 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC24.29■■□□□ 1.48
Ddx58Q6Q899 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC24.29■■□□□ 1.48
Ddx58Q6Q899 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Ddx58Q6Q899 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
Ddx58Q6Q899 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC24.29■■□□□ 1.48
Ddx58Q6Q899 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
Ddx58Q6Q899 Gm43006-201ENSMUST00000197702 1602 ntBASIC24.28■■□□□ 1.48
Ddx58Q6Q899 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Ddx58Q6Q899 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Ddx58Q6Q899 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Ddx58Q6Q899 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Ddx58Q6Q899 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Ddx58Q6Q899 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Ddx58Q6Q899 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC24.28■■□□□ 1.48
Ddx58Q6Q899 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Ddx58Q6Q899 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Ddx58Q6Q899 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
Ddx58Q6Q899 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Ddx58Q6Q899 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC24.27■■□□□ 1.48
Ddx58Q6Q899 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
Ddx58Q6Q899 Gm29257-201ENSMUST00000186115 639 ntBASIC24.27■■□□□ 1.48
Ddx58Q6Q899 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Ddx58Q6Q899 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
Ddx58Q6Q899 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Ddx58Q6Q899 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Ddx58Q6Q899 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
Ddx58Q6Q899 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
Ddx58Q6Q899 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
Ddx58Q6Q899 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
Ddx58Q6Q899 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
Ddx58Q6Q899 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
Ddx58Q6Q899 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
Ddx58Q6Q899 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
Ddx58Q6Q899 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Ddx58Q6Q899 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Ddx58Q6Q899 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Ddx58Q6Q899 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Ddx58Q6Q899 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Ddx58Q6Q899 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Ddx58Q6Q899 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Ddx58Q6Q899 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Ddx58Q6Q899 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC24.24■■□□□ 1.47
Ddx58Q6Q899 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC24.24■■□□□ 1.47
Ddx58Q6Q899 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC24.24■■□□□ 1.47
Ddx58Q6Q899 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Ddx58Q6Q899 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC24.24■■□□□ 1.47
Ddx58Q6Q899 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
Ddx58Q6Q899 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Ddx58Q6Q899 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC24.23■■□□□ 1.47
Ddx58Q6Q899 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Ddx58Q6Q899 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Ddx58Q6Q899 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
Ddx58Q6Q899 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC24.23■■□□□ 1.47
Ddx58Q6Q899 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
Ddx58Q6Q899 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Ddx58Q6Q899 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
Ddx58Q6Q899 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
Ddx58Q6Q899 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC24.22■■□□□ 1.47
Ddx58Q6Q899 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.47
Ddx58Q6Q899 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.47
Ddx58Q6Q899 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
Ddx58Q6Q899 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
Ddx58Q6Q899 Gm6802-201ENSMUST00000167843 1983 ntBASIC24.22■■□□□ 1.47
Ddx58Q6Q899 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Ddx58Q6Q899 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Ddx58Q6Q899 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.47
Ddx58Q6Q899 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Ddx58Q6Q899 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
Ddx58Q6Q899 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Ddx58Q6Q899 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Ddx58Q6Q899 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Ddx58Q6Q899 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC24.21■■□□□ 1.47
Ddx58Q6Q899 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Ddx58Q6Q899 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Ddx58Q6Q899 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Ddx58Q6Q899 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
Ddx58Q6Q899 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Ddx58Q6Q899 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Ddx58Q6Q899 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC24.21■■□□□ 1.47
Ddx58Q6Q899 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC24.21■■□□□ 1.47
Ddx58Q6Q899 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Ddx58Q6Q899 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Ddx58Q6Q899 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
Ddx58Q6Q899 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Ddx58Q6Q899 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC24.21■■□□□ 1.47
Ddx58Q6Q899 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
Ddx58Q6Q899 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.46
Ddx58Q6Q899 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Ddx58Q6Q899 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Ddx58Q6Q899 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Ddx58Q6Q899 Gm5297-201ENSMUST00000198555 1171 ntBASIC24.2■■□□□ 1.46
Ddx58Q6Q899 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Ddx58Q6Q899 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Ddx58Q6Q899 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Ddx58Q6Q899 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms