Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.5■□□□□ 0.87
Shkbp1Q6P7W2 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Shkbp1Q6P7W2 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Shkbp1Q6P7W2 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Shkbp1Q6P7W2 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Shkbp1Q6P7W2 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Shkbp1Q6P7W2 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Shkbp1Q6P7W2 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC20.49■□□□□ 0.87
Shkbp1Q6P7W2 CT010467.1-202ENSMUST00000205406 714 ntBASIC20.49■□□□□ 0.87
Shkbp1Q6P7W2 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Shkbp1Q6P7W2 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Shkbp1Q6P7W2 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Shkbp1Q6P7W2 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Shkbp1Q6P7W2 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.48■□□□□ 0.87
Shkbp1Q6P7W2 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Shkbp1Q6P7W2 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Shkbp1Q6P7W2 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
Shkbp1Q6P7W2 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Shkbp1Q6P7W2 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC20.48■□□□□ 0.87
Shkbp1Q6P7W2 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.48■□□□□ 0.87
Shkbp1Q6P7W2 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Shkbp1Q6P7W2 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Shkbp1Q6P7W2 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC20.48■□□□□ 0.87
Shkbp1Q6P7W2 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Shkbp1Q6P7W2 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Shkbp1Q6P7W2 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Shkbp1Q6P7W2 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Shkbp1Q6P7W2 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Shkbp1Q6P7W2 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Shkbp1Q6P7W2 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Shkbp1Q6P7W2 Gm12669-201ENSMUST00000122162 1009 ntBASIC20.47■□□□□ 0.87
Shkbp1Q6P7W2 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC20.47■□□□□ 0.87
Shkbp1Q6P7W2 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Shkbp1Q6P7W2 Gm42555-201ENSMUST00000199304 1039 ntBASIC20.47■□□□□ 0.87
Shkbp1Q6P7W2 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Shkbp1Q6P7W2 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Shkbp1Q6P7W2 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC20.47■□□□□ 0.87
Shkbp1Q6P7W2 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Shkbp1Q6P7W2 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.47■□□□□ 0.87
Shkbp1Q6P7W2 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Shkbp1Q6P7W2 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Shkbp1Q6P7W2 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Shkbp1Q6P7W2 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Shkbp1Q6P7W2 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
Shkbp1Q6P7W2 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20.46■□□□□ 0.87
Shkbp1Q6P7W2 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Shkbp1Q6P7W2 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Shkbp1Q6P7W2 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Shkbp1Q6P7W2 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Shkbp1Q6P7W2 Gm13042-201ENSMUST00000119244 1955 ntBASIC20.45■□□□□ 0.86
Shkbp1Q6P7W2 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Shkbp1Q6P7W2 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
Shkbp1Q6P7W2 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
Shkbp1Q6P7W2 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Shkbp1Q6P7W2 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Shkbp1Q6P7W2 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Shkbp1Q6P7W2 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Shkbp1Q6P7W2 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Shkbp1Q6P7W2 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Shkbp1Q6P7W2 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Shkbp1Q6P7W2 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC20.44■□□□□ 0.86
Shkbp1Q6P7W2 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC20.44■□□□□ 0.86
Shkbp1Q6P7W2 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Shkbp1Q6P7W2 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Shkbp1Q6P7W2 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.44■□□□□ 0.86
Shkbp1Q6P7W2 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Shkbp1Q6P7W2 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
Shkbp1Q6P7W2 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Shkbp1Q6P7W2 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Shkbp1Q6P7W2 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC20.43■□□□□ 0.86
Shkbp1Q6P7W2 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC20.43■□□□□ 0.86
Shkbp1Q6P7W2 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Shkbp1Q6P7W2 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Shkbp1Q6P7W2 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Shkbp1Q6P7W2 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Shkbp1Q6P7W2 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC20.43■□□□□ 0.86
Shkbp1Q6P7W2 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Shkbp1Q6P7W2 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
Shkbp1Q6P7W2 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC20.42■□□□□ 0.86
Shkbp1Q6P7W2 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Shkbp1Q6P7W2 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Shkbp1Q6P7W2 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Shkbp1Q6P7W2 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Shkbp1Q6P7W2 Mir5133-201ENSMUST00000174955 77 ntBASIC20.42■□□□□ 0.86
Shkbp1Q6P7W2 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
Shkbp1Q6P7W2 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Shkbp1Q6P7W2 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Shkbp1Q6P7W2 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Shkbp1Q6P7W2 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Shkbp1Q6P7W2 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Shkbp1Q6P7W2 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Shkbp1Q6P7W2 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC20.41■□□□□ 0.86
Shkbp1Q6P7W2 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Shkbp1Q6P7W2 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Shkbp1Q6P7W2 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Shkbp1Q6P7W2 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Shkbp1Q6P7W2 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Shkbp1Q6P7W2 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC20.41■□□□□ 0.86
Shkbp1Q6P7W2 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Shkbp1Q6P7W2 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC20.4■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms