Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav6d-4Q5R1I0 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav6d-4Q5R1I0 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
Trav6d-4Q5R1I0 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav6d-4Q5R1I0 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav6d-4Q5R1I0 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav6d-4Q5R1I0 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav6d-4Q5R1I0 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav6d-4Q5R1I0 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav6d-4Q5R1I0 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Trav6d-4Q5R1I0 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav6d-4Q5R1I0 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Trav6d-4Q5R1I0 Gm43909-201ENSMUST00000203443 1876 ntBASIC16.44■□□□□ 0.22
Trav6d-4Q5R1I0 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
Trav6d-4Q5R1I0 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav6d-4Q5R1I0 AA386476-201ENSMUST00000098781 1665 ntBASIC16.44■□□□□ 0.22
Trav6d-4Q5R1I0 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav6d-4Q5R1I0 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav6d-4Q5R1I0 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav6d-4Q5R1I0 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav6d-4Q5R1I0 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav6d-4Q5R1I0 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav6d-4Q5R1I0 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav6d-4Q5R1I0 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav6d-4Q5R1I0 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Trav6d-4Q5R1I0 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trav6d-4Q5R1I0 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav6d-4Q5R1I0 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
Trav6d-4Q5R1I0 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Trav6d-4Q5R1I0 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav6d-4Q5R1I0 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav6d-4Q5R1I0 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC16.43■□□□□ 0.22
Trav6d-4Q5R1I0 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Trav6d-4Q5R1I0 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC16.43■□□□□ 0.22
Trav6d-4Q5R1I0 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trav6d-4Q5R1I0 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC16.43■□□□□ 0.22
Trav6d-4Q5R1I0 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC16.43■□□□□ 0.22
Trav6d-4Q5R1I0 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav6d-4Q5R1I0 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav6d-4Q5R1I0 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav6d-4Q5R1I0 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Trav6d-4Q5R1I0 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav6d-4Q5R1I0 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trav6d-4Q5R1I0 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trav6d-4Q5R1I0 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav6d-4Q5R1I0 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC16.42■□□□□ 0.22
Trav6d-4Q5R1I0 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav6d-4Q5R1I0 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC16.42■□□□□ 0.22
Trav6d-4Q5R1I0 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC16.42■□□□□ 0.22
Trav6d-4Q5R1I0 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC16.42■□□□□ 0.22
Trav6d-4Q5R1I0 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Trav6d-4Q5R1I0 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trav6d-4Q5R1I0 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav6d-4Q5R1I0 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav6d-4Q5R1I0 Gm10129-202ENSMUST00000193100 1316 ntBASIC16.42■□□□□ 0.22
Trav6d-4Q5R1I0 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav6d-4Q5R1I0 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav6d-4Q5R1I0 Gm27801-201ENSMUST00000184174 223 ntBASIC16.41■□□□□ 0.22
Trav6d-4Q5R1I0 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC16.41■□□□□ 0.22
Trav6d-4Q5R1I0 AC099934.2-201ENSMUST00000196389 70 ntBASIC16.41■□□□□ 0.22
Trav6d-4Q5R1I0 AC156953.1-201ENSMUST00000196953 70 ntBASIC16.41■□□□□ 0.22
Trav6d-4Q5R1I0 AC157822.2-201ENSMUST00000200291 70 ntBASIC16.41■□□□□ 0.22
Trav6d-4Q5R1I0 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav6d-4Q5R1I0 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trav6d-4Q5R1I0 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav6d-4Q5R1I0 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav6d-4Q5R1I0 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav6d-4Q5R1I0 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
Trav6d-4Q5R1I0 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Trav6d-4Q5R1I0 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav6d-4Q5R1I0 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav6d-4Q5R1I0 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav6d-4Q5R1I0 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav6d-4Q5R1I0 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav6d-4Q5R1I0 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav6d-4Q5R1I0 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trav6d-4Q5R1I0 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trav6d-4Q5R1I0 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav6d-4Q5R1I0 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Trav6d-4Q5R1I0 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav6d-4Q5R1I0 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Trav6d-4Q5R1I0 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trav6d-4Q5R1I0 Gm42911-201ENSMUST00000199360 1630 ntBASIC16.4■□□□□ 0.22
Trav6d-4Q5R1I0 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav6d-4Q5R1I0 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav6d-4Q5R1I0 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav6d-4Q5R1I0 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav6d-4Q5R1I0 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav6d-4Q5R1I0 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav6d-4Q5R1I0 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav6d-4Q5R1I0 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC16.39■□□□□ 0.21
Trav6d-4Q5R1I0 AC154266.1-201ENSMUST00000223190 503 ntBASIC16.39■□□□□ 0.21
Trav6d-4Q5R1I0 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav6d-4Q5R1I0 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav6d-4Q5R1I0 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav6d-4Q5R1I0 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trav6d-4Q5R1I0 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav6d-4Q5R1I0 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav6d-4Q5R1I0 Gm6802-201ENSMUST00000167843 1983 ntBASIC16.38■□□□□ 0.21
Trav6d-4Q5R1I0 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 79.3 ms