Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trav5d-4Q5R1F6 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trav5d-4Q5R1F6 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trav5d-4Q5R1F6 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC16.78■□□□□ 0.28
Trav5d-4Q5R1F6 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trav5d-4Q5R1F6 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trav5d-4Q5R1F6 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
Trav5d-4Q5R1F6 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC16.78■□□□□ 0.28
Trav5d-4Q5R1F6 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC16.78■□□□□ 0.28
Trav5d-4Q5R1F6 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trav5d-4Q5R1F6 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trav5d-4Q5R1F6 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Trav5d-4Q5R1F6 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Trav5d-4Q5R1F6 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trav5d-4Q5R1F6 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC16.77■□□□□ 0.28
Trav5d-4Q5R1F6 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
Trav5d-4Q5R1F6 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trav5d-4Q5R1F6 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
Trav5d-4Q5R1F6 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC16.77■□□□□ 0.28
Trav5d-4Q5R1F6 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Trav5d-4Q5R1F6 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC16.77■□□□□ 0.28
Trav5d-4Q5R1F6 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trav5d-4Q5R1F6 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trav5d-4Q5R1F6 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trav5d-4Q5R1F6 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.27
Trav5d-4Q5R1F6 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC16.76■□□□□ 0.27
Trav5d-4Q5R1F6 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav5d-4Q5R1F6 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Trav5d-4Q5R1F6 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Trav5d-4Q5R1F6 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav5d-4Q5R1F6 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav5d-4Q5R1F6 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
Trav5d-4Q5R1F6 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav5d-4Q5R1F6 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Trav5d-4Q5R1F6 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav5d-4Q5R1F6 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Trav5d-4Q5R1F6 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Trav5d-4Q5R1F6 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav5d-4Q5R1F6 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Trav5d-4Q5R1F6 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC16.75■□□□□ 0.27
Trav5d-4Q5R1F6 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC16.75■□□□□ 0.27
Trav5d-4Q5R1F6 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
Trav5d-4Q5R1F6 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav5d-4Q5R1F6 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC16.75■□□□□ 0.27
Trav5d-4Q5R1F6 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav5d-4Q5R1F6 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC16.75■□□□□ 0.27
Trav5d-4Q5R1F6 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav5d-4Q5R1F6 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trav5d-4Q5R1F6 Hsf1-204ENSMUST00000226872 2104 ntBASIC16.74■□□□□ 0.27
Trav5d-4Q5R1F6 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav5d-4Q5R1F6 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Trav5d-4Q5R1F6 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav5d-4Q5R1F6 Gm20100-201ENSMUST00000209418 2272 ntBASIC16.73■□□□□ 0.27
Trav5d-4Q5R1F6 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav5d-4Q5R1F6 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trav5d-4Q5R1F6 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav5d-4Q5R1F6 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trav5d-4Q5R1F6 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav5d-4Q5R1F6 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC16.73■□□□□ 0.27
Trav5d-4Q5R1F6 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav5d-4Q5R1F6 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav5d-4Q5R1F6 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav5d-4Q5R1F6 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trav5d-4Q5R1F6 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav5d-4Q5R1F6 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav5d-4Q5R1F6 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav5d-4Q5R1F6 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav5d-4Q5R1F6 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav5d-4Q5R1F6 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trav5d-4Q5R1F6 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
Trav5d-4Q5R1F6 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trav5d-4Q5R1F6 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC16.72■□□□□ 0.27
Trav5d-4Q5R1F6 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trav5d-4Q5R1F6 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
Trav5d-4Q5R1F6 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav5d-4Q5R1F6 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav5d-4Q5R1F6 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trav5d-4Q5R1F6 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trav5d-4Q5R1F6 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Trav5d-4Q5R1F6 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Trav5d-4Q5R1F6 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trav5d-4Q5R1F6 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trav5d-4Q5R1F6 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Trav5d-4Q5R1F6 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trav5d-4Q5R1F6 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trav5d-4Q5R1F6 AA386476-201ENSMUST00000098781 1665 ntBASIC16.7■□□□□ 0.26
Trav5d-4Q5R1F6 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC16.7■□□□□ 0.26
Trav5d-4Q5R1F6 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Trav5d-4Q5R1F6 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
Trav5d-4Q5R1F6 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trav5d-4Q5R1F6 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Trav5d-4Q5R1F6 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC16.69■□□□□ 0.26
Trav5d-4Q5R1F6 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trav5d-4Q5R1F6 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trav5d-4Q5R1F6 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trav5d-4Q5R1F6 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trav5d-4Q5R1F6 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trav5d-4Q5R1F6 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trav5d-4Q5R1F6 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Trav5d-4Q5R1F6 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms