Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC25.14■■□□□ 1.61
Ddb1Q3U1J4 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
Ddb1Q3U1J4 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Ddb1Q3U1J4 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Ddb1Q3U1J4 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Ddb1Q3U1J4 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Ddb1Q3U1J4 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
Ddb1Q3U1J4 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Ddb1Q3U1J4 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
Ddb1Q3U1J4 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Ddb1Q3U1J4 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC25.12■■□□□ 1.61
Ddb1Q3U1J4 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Ddb1Q3U1J4 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Ddb1Q3U1J4 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Ddb1Q3U1J4 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Ddb1Q3U1J4 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Ddb1Q3U1J4 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Ddb1Q3U1J4 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC25.11■■□□□ 1.61
Ddb1Q3U1J4 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Ddb1Q3U1J4 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Ddb1Q3U1J4 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC25.11■■□□□ 1.61
Ddb1Q3U1J4 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC25.11■■□□□ 1.61
Ddb1Q3U1J4 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC25.11■■□□□ 1.61
Ddb1Q3U1J4 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Ddb1Q3U1J4 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Ddb1Q3U1J4 AC130671.1-201ENSMUST00000227384 1237 ntBASIC25.1■■□□□ 1.61
Ddb1Q3U1J4 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
Ddb1Q3U1J4 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC25.1■■□□□ 1.61
Ddb1Q3U1J4 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Ddb1Q3U1J4 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC25.09■■□□□ 1.61
Ddb1Q3U1J4 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
Ddb1Q3U1J4 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Ddb1Q3U1J4 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC25.09■■□□□ 1.61
Ddb1Q3U1J4 Gm27275-201ENSMUST00000184318 272 ntBASIC25.09■■□□□ 1.61
Ddb1Q3U1J4 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Ddb1Q3U1J4 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Ddb1Q3U1J4 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
Ddb1Q3U1J4 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Ddb1Q3U1J4 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
Ddb1Q3U1J4 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Ddb1Q3U1J4 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Ddb1Q3U1J4 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC25.08■■□□□ 1.61
Ddb1Q3U1J4 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC25.08■■□□□ 1.61
Ddb1Q3U1J4 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC25.08■■□□□ 1.61
Ddb1Q3U1J4 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Ddb1Q3U1J4 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Ddb1Q3U1J4 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC25.08■■□□□ 1.61
Ddb1Q3U1J4 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
Ddb1Q3U1J4 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC25.08■■□□□ 1.6
Ddb1Q3U1J4 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Ddb1Q3U1J4 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
Ddb1Q3U1J4 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Ddb1Q3U1J4 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Ddb1Q3U1J4 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Ddb1Q3U1J4 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
Ddb1Q3U1J4 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
Ddb1Q3U1J4 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Ddb1Q3U1J4 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Ddb1Q3U1J4 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC25.06■■□□□ 1.6
Ddb1Q3U1J4 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Ddb1Q3U1J4 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC25.06■■□□□ 1.6
Ddb1Q3U1J4 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
Ddb1Q3U1J4 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Ddb1Q3U1J4 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
Ddb1Q3U1J4 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Ddb1Q3U1J4 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
Ddb1Q3U1J4 Gm37563-201ENSMUST00000192580 1513 ntBASIC25.06■■□□□ 1.6
Ddb1Q3U1J4 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
Ddb1Q3U1J4 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
Ddb1Q3U1J4 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
Ddb1Q3U1J4 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Ddb1Q3U1J4 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Ddb1Q3U1J4 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Ddb1Q3U1J4 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Ddb1Q3U1J4 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC25.05■■□□□ 1.6
Ddb1Q3U1J4 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Ddb1Q3U1J4 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Ddb1Q3U1J4 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Ddb1Q3U1J4 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Ddb1Q3U1J4 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
Ddb1Q3U1J4 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
Ddb1Q3U1J4 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
Ddb1Q3U1J4 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Ddb1Q3U1J4 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Ddb1Q3U1J4 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
Ddb1Q3U1J4 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Ddb1Q3U1J4 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC25.04■■□□□ 1.6
Ddb1Q3U1J4 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
Ddb1Q3U1J4 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Ddb1Q3U1J4 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
Ddb1Q3U1J4 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Ddb1Q3U1J4 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
Ddb1Q3U1J4 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC25.03■■□□□ 1.6
Ddb1Q3U1J4 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC25.03■■□□□ 1.6
Ddb1Q3U1J4 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
Ddb1Q3U1J4 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
Ddb1Q3U1J4 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Ddb1Q3U1J4 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Ddb1Q3U1J4 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
Ddb1Q3U1J4 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms