Protein–RNA interactions for Protein: P97503

Nkx3-2, Homeobox protein Nkx-3.2, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-2P97503 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nkx3-2P97503 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nkx3-2P97503 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nkx3-2P97503 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC18.4■□□□□ 0.54
Nkx3-2P97503 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nkx3-2P97503 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Nkx3-2P97503 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Nkx3-2P97503 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nkx3-2P97503 Gm11421-201ENSMUST00000122124 294 ntBASIC18.39■□□□□ 0.53
Nkx3-2P97503 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC18.39■□□□□ 0.53
Nkx3-2P97503 Gm40848-201ENSMUST00000221998 324 ntBASIC18.39■□□□□ 0.53
Nkx3-2P97503 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nkx3-2P97503 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nkx3-2P97503 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nkx3-2P97503 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nkx3-2P97503 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nkx3-2P97503 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Nkx3-2P97503 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC18.38■□□□□ 0.53
Nkx3-2P97503 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
Nkx3-2P97503 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Nkx3-2P97503 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nkx3-2P97503 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Nkx3-2P97503 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Nkx3-2P97503 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Nkx3-2P97503 Gm10129-202ENSMUST00000193100 1316 ntBASIC18.38■□□□□ 0.53
Nkx3-2P97503 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Nkx3-2P97503 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC18.38■□□□□ 0.53
Nkx3-2P97503 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC18.38■□□□□ 0.53
Nkx3-2P97503 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nkx3-2P97503 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Nkx3-2P97503 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC18.37■□□□□ 0.53
Nkx3-2P97503 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nkx3-2P97503 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nkx3-2P97503 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC18.37■□□□□ 0.53
Nkx3-2P97503 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nkx3-2P97503 AC137127.1-201ENSMUST00000213466 1078 ntBASIC18.37■□□□□ 0.53
Nkx3-2P97503 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC18.37■□□□□ 0.53
Nkx3-2P97503 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Nkx3-2P97503 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nkx3-2P97503 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nkx3-2P97503 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nkx3-2P97503 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nkx3-2P97503 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Nkx3-2P97503 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Nkx3-2P97503 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Nkx3-2P97503 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC18.36■□□□□ 0.53
Nkx3-2P97503 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC18.36■□□□□ 0.53
Nkx3-2P97503 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nkx3-2P97503 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Nkx3-2P97503 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
Nkx3-2P97503 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
Nkx3-2P97503 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Nkx3-2P97503 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nkx3-2P97503 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC18.35■□□□□ 0.53
Nkx3-2P97503 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Nkx3-2P97503 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nkx3-2P97503 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nkx3-2P97503 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nkx3-2P97503 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nkx3-2P97503 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nkx3-2P97503 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Nkx3-2P97503 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Nkx3-2P97503 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nkx3-2P97503 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nkx3-2P97503 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nkx3-2P97503 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Nkx3-2P97503 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nkx3-2P97503 Gm5112-201ENSMUST00000204407 2368 ntBASIC18.33■□□□□ 0.53
Nkx3-2P97503 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Nkx3-2P97503 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Nkx3-2P97503 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Nkx3-2P97503 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Nkx3-2P97503 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Nkx3-2P97503 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Nkx3-2P97503 Gm10849-201ENSMUST00000100397 618 ntBASIC18.33■□□□□ 0.52
Nkx3-2P97503 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Nkx3-2P97503 AC099934.2-201ENSMUST00000196389 70 ntBASIC18.33■□□□□ 0.52
Nkx3-2P97503 AC156953.1-201ENSMUST00000196953 70 ntBASIC18.33■□□□□ 0.52
Nkx3-2P97503 AC157822.2-201ENSMUST00000200291 70 ntBASIC18.33■□□□□ 0.52
Nkx3-2P97503 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Nkx3-2P97503 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Nkx3-2P97503 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Nkx3-2P97503 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Nkx3-2P97503 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Nkx3-2P97503 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nkx3-2P97503 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nkx3-2P97503 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nkx3-2P97503 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC18.32■□□□□ 0.52
Nkx3-2P97503 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Nkx3-2P97503 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nkx3-2P97503 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nkx3-2P97503 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nkx3-2P97503 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nkx3-2P97503 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nkx3-2P97503 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC18.32■□□□□ 0.52
Nkx3-2P97503 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Nkx3-2P97503 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC18.31■□□□□ 0.52
Nkx3-2P97503 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Nkx3-2P97503 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC18.31■□□□□ 0.52
Nkx3-2P97503 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms