Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Shmt1P50431 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Shmt1P50431 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC20.74■□□□□ 0.91
Shmt1P50431 AC137127.1-201ENSMUST00000213466 1078 ntBASIC20.74■□□□□ 0.91
Shmt1P50431 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Shmt1P50431 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Shmt1P50431 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
Shmt1P50431 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Shmt1P50431 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Shmt1P50431 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Shmt1P50431 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.74■□□□□ 0.91
Shmt1P50431 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC20.73■□□□□ 0.91
Shmt1P50431 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
Shmt1P50431 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Shmt1P50431 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Shmt1P50431 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Shmt1P50431 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Shmt1P50431 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Shmt1P50431 Gm5874-201ENSMUST00000096101 508 ntBASIC20.73■□□□□ 0.91
Shmt1P50431 Gm42911-201ENSMUST00000199360 1630 ntBASIC20.73■□□□□ 0.91
Shmt1P50431 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Shmt1P50431 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Shmt1P50431 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Shmt1P50431 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Shmt1P50431 Gm10571-201ENSMUST00000097869 1638 ntBASIC20.72■□□□□ 0.91
Shmt1P50431 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC20.72■□□□□ 0.91
Shmt1P50431 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Shmt1P50431 Gm20100-201ENSMUST00000209418 2272 ntBASIC20.72■□□□□ 0.91
Shmt1P50431 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Shmt1P50431 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Shmt1P50431 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Shmt1P50431 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Shmt1P50431 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Shmt1P50431 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Shmt1P50431 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Shmt1P50431 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Shmt1P50431 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Shmt1P50431 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Shmt1P50431 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Shmt1P50431 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Shmt1P50431 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Shmt1P50431 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Shmt1P50431 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
Shmt1P50431 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Shmt1P50431 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Shmt1P50431 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Shmt1P50431 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Shmt1P50431 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Shmt1P50431 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Shmt1P50431 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Shmt1P50431 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC20.7■□□□□ 0.9
Shmt1P50431 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
Shmt1P50431 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Shmt1P50431 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Shmt1P50431 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Shmt1P50431 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Shmt1P50431 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Shmt1P50431 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC20.69■□□□□ 0.9
Shmt1P50431 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Shmt1P50431 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC20.69■□□□□ 0.9
Shmt1P50431 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Shmt1P50431 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shmt1P50431 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shmt1P50431 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shmt1P50431 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shmt1P50431 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
Shmt1P50431 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC20.68■□□□□ 0.9
Shmt1P50431 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
Shmt1P50431 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
Shmt1P50431 AC154266.1-201ENSMUST00000223190 503 ntBASIC20.68■□□□□ 0.9
Shmt1P50431 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC20.68■□□□□ 0.9
Shmt1P50431 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Shmt1P50431 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shmt1P50431 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shmt1P50431 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shmt1P50431 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shmt1P50431 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shmt1P50431 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shmt1P50431 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shmt1P50431 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Shmt1P50431 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shmt1P50431 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
Shmt1P50431 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shmt1P50431 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shmt1P50431 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC20.66■□□□□ 0.9
Shmt1P50431 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Shmt1P50431 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC20.66■□□□□ 0.9
Shmt1P50431 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
Shmt1P50431 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Shmt1P50431 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shmt1P50431 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC20.66■□□□□ 0.9
Shmt1P50431 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shmt1P50431 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Shmt1P50431 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shmt1P50431 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
Shmt1P50431 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shmt1P50431 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shmt1P50431 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shmt1P50431 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.65■□□□□ 0.9
Shmt1P50431 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 16 ms