Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
HttP42859 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC21.36■■□□□ 1.01
HttP42859 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
HttP42859 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
HttP42859 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
HttP42859 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
HttP42859 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
HttP42859 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HttP42859 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC21.36■■□□□ 1.01
HttP42859 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HttP42859 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
HttP42859 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HttP42859 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HttP42859 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HttP42859 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HttP42859 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
HttP42859 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HttP42859 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HttP42859 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HttP42859 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HttP42859 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC21.34■■□□□ 1.01
HttP42859 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC21.34■■□□□ 1.01
HttP42859 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
HttP42859 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
HttP42859 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HttP42859 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HttP42859 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HttP42859 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC21.33■■□□□ 1.01
HttP42859 AC153881.2-201ENSMUST00000214877 204 ntBASIC21.33■■□□□ 1.01
HttP42859 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
HttP42859 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HttP42859 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HttP42859 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HttP42859 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC21.33■■□□□ 1
HttP42859 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC21.33■■□□□ 1
HttP42859 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
HttP42859 Gm11249-201ENSMUST00000117071 859 ntBASIC21.32■■□□□ 1
HttP42859 Gm6433-201ENSMUST00000118634 875 ntBASIC21.32■■□□□ 1
HttP42859 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HttP42859 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC21.32■■□□□ 1
HttP42859 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HttP42859 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC21.32■■□□□ 1
HttP42859 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HttP42859 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC21.32■■□□□ 1
HttP42859 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HttP42859 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC21.32■■□□□ 1
HttP42859 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HttP42859 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC21.32■■□□□ 1
HttP42859 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
HttP42859 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
HttP42859 Gm12896-201ENSMUST00000118430 226 ntBASIC21.31■■□□□ 1
HttP42859 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC21.31■■□□□ 1
HttP42859 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HttP42859 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HttP42859 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC21.31■■□□□ 1
HttP42859 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HttP42859 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC21.31■■□□□ 1
HttP42859 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC21.31■■□□□ 1
HttP42859 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
HttP42859 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC21.31■■□□□ 1
HttP42859 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HttP42859 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC21.31■■□□□ 1
HttP42859 Gm10231-201ENSMUST00000181584 441 ntBASIC21.31■■□□□ 1
HttP42859 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HttP42859 Gm10175-202ENSMUST00000208752 441 ntBASIC21.31■■□□□ 1
HttP42859 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HttP42859 Gm9987-201ENSMUST00000069768 567 ntBASIC21.31■■□□□ 1
HttP42859 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HttP42859 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HttP42859 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HttP42859 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HttP42859 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HttP42859 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HttP42859 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC21.3■■□□□ 1
HttP42859 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HttP42859 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HttP42859 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC21.3■■□□□ 1
HttP42859 Rab3c-203ENSMUST00000224180 967 ntBASIC21.3■■□□□ 1
HttP42859 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
HttP42859 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC21.29■■□□□ 1
HttP42859 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
HttP42859 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC21.29■■□□□ 1
HttP42859 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HttP42859 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HttP42859 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HttP42859 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
HttP42859 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
HttP42859 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HttP42859 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC21.29■■□□□ 1
HttP42859 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
HttP42859 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HttP42859 Gm10698-201ENSMUST00000182663 604 ntBASIC21.28■■□□□ 1
HttP42859 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC21.28■■□□□ 1
HttP42859 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC21.28■■□□□ 1
HttP42859 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC21.28■■□□□ 1
HttP42859 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
HttP42859 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC21.27■■□□□ 1
HttP42859 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC21.27■■□□□ 1
HttP42859 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HttP42859 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC21.27■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms