Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Vti1aO89116 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Vti1aO89116 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Vti1aO89116 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC21.06■□□□□ 0.96
Vti1aO89116 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Vti1aO89116 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Vti1aO89116 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC21.06■□□□□ 0.96
Vti1aO89116 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Vti1aO89116 Mir6236-201ENSMUST00000184437 123 ntBASIC21.06■□□□□ 0.96
Vti1aO89116 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Vti1aO89116 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Vti1aO89116 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Vti1aO89116 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC21.06■□□□□ 0.96
Vti1aO89116 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC21.06■□□□□ 0.96
Vti1aO89116 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Vti1aO89116 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Vti1aO89116 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Vti1aO89116 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Vti1aO89116 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vti1aO89116 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC21.05■□□□□ 0.96
Vti1aO89116 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Vti1aO89116 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vti1aO89116 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC21.05■□□□□ 0.96
Vti1aO89116 AV356131-201ENSMUST00000206201 750 ntBASIC21.05■□□□□ 0.96
Vti1aO89116 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vti1aO89116 Gm9988-201ENSMUST00000069786 435 ntBASIC21.05■□□□□ 0.96
Vti1aO89116 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vti1aO89116 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vti1aO89116 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vti1aO89116 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vti1aO89116 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vti1aO89116 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Vti1aO89116 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vti1aO89116 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vti1aO89116 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vti1aO89116 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Vti1aO89116 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Vti1aO89116 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Vti1aO89116 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Vti1aO89116 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Vti1aO89116 Gm10849-201ENSMUST00000100397 618 ntBASIC21.04■□□□□ 0.96
Vti1aO89116 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Vti1aO89116 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Vti1aO89116 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Vti1aO89116 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Vti1aO89116 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC21.04■□□□□ 0.96
Vti1aO89116 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Vti1aO89116 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Vti1aO89116 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Vti1aO89116 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Vti1aO89116 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC21.03■□□□□ 0.96
Vti1aO89116 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vti1aO89116 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vti1aO89116 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vti1aO89116 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vti1aO89116 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC21.03■□□□□ 0.96
Vti1aO89116 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC21.03■□□□□ 0.96
Vti1aO89116 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Vti1aO89116 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vti1aO89116 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Vti1aO89116 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vti1aO89116 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vti1aO89116 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vti1aO89116 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vti1aO89116 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vti1aO89116 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vti1aO89116 AC137127.1-201ENSMUST00000213466 1078 ntBASIC21.02■□□□□ 0.96
Vti1aO89116 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vti1aO89116 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vti1aO89116 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vti1aO89116 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC21.02■□□□□ 0.96
Vti1aO89116 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vti1aO89116 Gm20634-201ENSMUST00000090779 2956 ntBASIC21.02■□□□□ 0.96
Vti1aO89116 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Vti1aO89116 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Vti1aO89116 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vti1aO89116 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vti1aO89116 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC21.01■□□□□ 0.95
Vti1aO89116 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Vti1aO89116 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vti1aO89116 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vti1aO89116 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vti1aO89116 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC21.01■□□□□ 0.95
Vti1aO89116 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Vti1aO89116 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC21■□□□□ 0.95
Vti1aO89116 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC21■□□□□ 0.95
Vti1aO89116 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC21■□□□□ 0.95
Vti1aO89116 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC21■□□□□ 0.95
Vti1aO89116 Gm10033-202ENSMUST00000211874 928 ntBASIC21■□□□□ 0.95
Vti1aO89116 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC21■□□□□ 0.95
Vti1aO89116 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vti1aO89116 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vti1aO89116 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vti1aO89116 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vti1aO89116 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC20.99■□□□□ 0.95
Vti1aO89116 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.99■□□□□ 0.95
Vti1aO89116 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Vti1aO89116 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vti1aO89116 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vti1aO89116 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms