Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col5a1O88207 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col5a1O88207 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Col5a1O88207 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col5a1O88207 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Col5a1O88207 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col5a1O88207 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col5a1O88207 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col5a1O88207 AC152827.1-201ENSMUST00000221143 2189 ntBASIC17.91■□□□□ 0.46
Col5a1O88207 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col5a1O88207 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col5a1O88207 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Col5a1O88207 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC17.91■□□□□ 0.46
Col5a1O88207 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col5a1O88207 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col5a1O88207 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col5a1O88207 Gm13181-201ENSMUST00000120117 1069 ntBASIC17.9■□□□□ 0.46
Col5a1O88207 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col5a1O88207 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Col5a1O88207 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col5a1O88207 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Col5a1O88207 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
Col5a1O88207 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
Col5a1O88207 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Col5a1O88207 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col5a1O88207 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col5a1O88207 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Col5a1O88207 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col5a1O88207 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col5a1O88207 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Col5a1O88207 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
Col5a1O88207 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Col5a1O88207 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Col5a1O88207 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC17.88■□□□□ 0.45
Col5a1O88207 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Col5a1O88207 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Col5a1O88207 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col5a1O88207 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Col5a1O88207 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col5a1O88207 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col5a1O88207 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC17.88■□□□□ 0.45
Col5a1O88207 Gm5408-201ENSMUST00000197998 747 ntBASIC17.88■□□□□ 0.45
Col5a1O88207 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC17.88■□□□□ 0.45
Col5a1O88207 AC135637.1-201ENSMUST00000227750 365 ntBASIC17.88■□□□□ 0.45
Col5a1O88207 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Col5a1O88207 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col5a1O88207 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col5a1O88207 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col5a1O88207 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col5a1O88207 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Col5a1O88207 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col5a1O88207 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC17.87■□□□□ 0.45
Col5a1O88207 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC17.87■□□□□ 0.45
Col5a1O88207 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col5a1O88207 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Col5a1O88207 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col5a1O88207 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Col5a1O88207 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Col5a1O88207 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col5a1O88207 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Col5a1O88207 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col5a1O88207 Gm20049-201ENSMUST00000219950 730 ntBASIC17.86■□□□□ 0.45
Col5a1O88207 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col5a1O88207 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col5a1O88207 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC17.86■□□□□ 0.45
Col5a1O88207 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC17.86■□□□□ 0.45
Col5a1O88207 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col5a1O88207 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col5a1O88207 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col5a1O88207 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col5a1O88207 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col5a1O88207 Gm37856-201ENSMUST00000191634 999 ntBASIC17.85■□□□□ 0.45
Col5a1O88207 Gm3807-201ENSMUST00000193520 1168 ntBASIC17.85■□□□□ 0.45
Col5a1O88207 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Col5a1O88207 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col5a1O88207 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col5a1O88207 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Col5a1O88207 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col5a1O88207 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Col5a1O88207 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col5a1O88207 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col5a1O88207 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Col5a1O88207 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC17.84■□□□□ 0.45
Col5a1O88207 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC17.84■□□□□ 0.45
Col5a1O88207 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC17.84■□□□□ 0.45
Col5a1O88207 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC17.84■□□□□ 0.45
Col5a1O88207 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Col5a1O88207 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Col5a1O88207 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col5a1O88207 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Col5a1O88207 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col5a1O88207 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
Col5a1O88207 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Col5a1O88207 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC17.83■□□□□ 0.45
Col5a1O88207 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC17.83■□□□□ 0.44
Col5a1O88207 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Col5a1O88207 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Col5a1O88207 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC17.83■□□□□ 0.44
Col5a1O88207 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Col5a1O88207 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms