Protein–RNA interactions for Protein: B1AVM1

Gm12887, Predicted gene 12887, mousemouse

Predictions only

Length 119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Gm12887B1AVM1 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Gm12887B1AVM1 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Gm12887B1AVM1 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Gm12887B1AVM1 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Gm12887B1AVM1 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC15.79■□□□□ 0.12
Gm12887B1AVM1 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Gm12887B1AVM1 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Gm12887B1AVM1 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Gm12887B1AVM1 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Gm12887B1AVM1 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Gm12887B1AVM1 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC15.79■□□□□ 0.12
Gm12887B1AVM1 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Gm12887B1AVM1 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Gm12887B1AVM1 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Gm12887B1AVM1 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Gm12887B1AVM1 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Gm12887B1AVM1 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Gm12887B1AVM1 Cdkn3-203ENSMUST00000227149 1952 ntBASIC15.78■□□□□ 0.12
Gm12887B1AVM1 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Gm12887B1AVM1 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Gm12887B1AVM1 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Gm12887B1AVM1 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Gm12887B1AVM1 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Gm12887B1AVM1 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Gm12887B1AVM1 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Gm12887B1AVM1 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
Gm12887B1AVM1 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Gm12887B1AVM1 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Gm12887B1AVM1 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Gm12887B1AVM1 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Gm12887B1AVM1 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
Gm12887B1AVM1 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Gm12887B1AVM1 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Gm12887B1AVM1 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Gm12887B1AVM1 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Gm12887B1AVM1 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
Gm12887B1AVM1 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Gm12887B1AVM1 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Gm12887B1AVM1 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Gm12887B1AVM1 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Gm12887B1AVM1 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC15.77■□□□□ 0.11
Gm12887B1AVM1 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Gm12887B1AVM1 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Gm12887B1AVM1 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Gm12887B1AVM1 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC15.76■□□□□ 0.11
Gm12887B1AVM1 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Gm12887B1AVM1 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Gm12887B1AVM1 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Gm12887B1AVM1 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
Gm12887B1AVM1 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC15.76■□□□□ 0.11
Gm12887B1AVM1 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Gm12887B1AVM1 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Gm12887B1AVM1 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Gm12887B1AVM1 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Gm12887B1AVM1 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Gm12887B1AVM1 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Gm12887B1AVM1 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Gm12887B1AVM1 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Gm12887B1AVM1 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Gm12887B1AVM1 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Gm12887B1AVM1 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Gm12887B1AVM1 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Gm12887B1AVM1 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Gm12887B1AVM1 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Gm12887B1AVM1 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Gm12887B1AVM1 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Gm12887B1AVM1 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Gm12887B1AVM1 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Gm12887B1AVM1 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Gm12887B1AVM1 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC15.75■□□□□ 0.11
Gm12887B1AVM1 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC15.75■□□□□ 0.11
Gm12887B1AVM1 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Gm12887B1AVM1 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
Gm12887B1AVM1 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Gm12887B1AVM1 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms