Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Airn-205ENSMUST00000161890 1375 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Robo4-202ENSMUST00000115046 3878 ntAPPRIS ALT2 TSL 2 BASIC8.09□□□□□ -1.11
Hmgb3O54879 Gm43119-201ENSMUST00000196957 2122 ntBASIC8.09□□□□□ -1.11
Hmgb3O54879 Ctnnd1-203ENSMUST00000067232 6119 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Timeless-203ENSMUST00000105242 4385 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Veph1-201ENSMUST00000029419 6431 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Sbf2-201ENSMUST00000033058 7154 ntAPPRIS P2 TSL 5 BASIC8.09□□□□□ -1.11
Hmgb3O54879 Tgfb1i1-204ENSMUST00000164710 3788 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Brcc3-203ENSMUST00000118428 2093 ntAPPRIS ALT2 TSL 5 BASIC8.09□□□□□ -1.11
Hmgb3O54879 Kansl3-204ENSMUST00000185912 4527 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Carhsp1-201ENSMUST00000008537 2849 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Olfr6-202ENSMUST00000213552 4349 ntAPPRIS P1 TSL 5 BASIC8.09□□□□□ -1.11
Hmgb3O54879 Drc3-203ENSMUST00000108722 1858 ntAPPRIS ALT2 TSL 5 BASIC8.09□□□□□ -1.11
Hmgb3O54879 Cnpy4-202ENSMUST00000110934 1855 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Eif4e1b-206ENSMUST00000132728 1897 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 1700017G19Rik-201ENSMUST00000035860 2437 ntTSL 2 BASIC8.09□□□□□ -1.11
Hmgb3O54879 Dhx30-203ENSMUST00000165596 3726 ntTSL 5 BASIC8.09□□□□□ -1.11
Hmgb3O54879 Ilf3-203ENSMUST00000213518 3513 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Ddb2-202ENSMUST00000111352 2228 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Prr16-201ENSMUST00000116639 2224 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Pvt1-203ENSMUST00000181657 2798 ntTSL 5 BASIC8.09□□□□□ -1.11
Hmgb3O54879 5031425E22Rik-202ENSMUST00000185943 1477 ntTSL 5 BASIC8.09□□□□□ -1.11
Hmgb3O54879 Sf3a3-201ENSMUST00000030734 1820 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
Hmgb3O54879 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC8.09□□□□□ -1.11
Hmgb3O54879 Gm11919-201ENSMUST00000117609 721 ntBASIC8.09□□□□□ -1.11
Hmgb3O54879 Gm14892-201ENSMUST00000117636 267 ntBASIC8.09□□□□□ -1.11
Hmgb3O54879 Gm13022-201ENSMUST00000121181 285 ntBASIC8.09□□□□□ -1.11
Hmgb3O54879 Gm12271-201ENSMUST00000121719 414 ntBASIC8.09□□□□□ -1.11
Hmgb3O54879 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Gm12705-201ENSMUST00000129460 872 ntTSL 2 BASIC8.09□□□□□ -1.11
Hmgb3O54879 Treml4-203ENSMUST00000136272 811 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC8.09□□□□□ -1.11
Hmgb3O54879 Gm12737-201ENSMUST00000142835 725 ntTSL 5 BASIC8.09□□□□□ -1.11
Hmgb3O54879 Treml4-206ENSMUST00000154335 838 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Gm20471-201ENSMUST00000172793 626 ntTSL 3 BASIC8.09□□□□□ -1.11
Hmgb3O54879 Pax5-212ENSMUST00000173733 885 ntTSL 5 BASIC8.09□□□□□ -1.11
Hmgb3O54879 Ube2i-214ENSMUST00000174216 1144 ntTSL 2 BASIC8.09□□□□□ -1.11
Hmgb3O54879 Olfr1432-201ENSMUST00000180978 930 ntAPPRIS ALT2 BASIC8.09□□□□□ -1.11
Hmgb3O54879 Gm37232-201ENSMUST00000194887 367 ntBASIC8.09□□□□□ -1.11
Hmgb3O54879 Gm5650-201ENSMUST00000209641 598 ntBASIC8.09□□□□□ -1.11
Hmgb3O54879 Ccdc114-205ENSMUST00000211367 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Gm7525-201ENSMUST00000219425 454 ntBASIC8.09□□□□□ -1.11
Hmgb3O54879 AC153152.3-201ENSMUST00000222188 1135 ntBASIC8.09□□□□□ -1.11
Hmgb3O54879 AC107711.1-201ENSMUST00000227258 1295 ntBASIC8.09□□□□□ -1.11
Hmgb3O54879 AC161172.1-201ENSMUST00000227801 486 ntBASIC8.09□□□□□ -1.11
Hmgb3O54879 Adipoq-201ENSMUST00000023593 1292 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
Hmgb3O54879 Crygd-201ENSMUST00000045028 613 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Asna1-201ENSMUST00000064314 1256 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
Hmgb3O54879 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
Hmgb3O54879 Gm38005-201ENSMUST00000194845 2745 ntBASIC8.09□□□□□ -1.11
Hmgb3O54879 Trim13-202ENSMUST00000165015 1619 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Pcyt1b-201ENSMUST00000045898 4888 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Cdca8-202ENSMUST00000084296 1626 ntAPPRIS P2 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Frmd4b-204ENSMUST00000113359 4311 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Rab43-201ENSMUST00000032134 4308 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Sfxn2-201ENSMUST00000026011 3210 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Mef2a-208ENSMUST00000156690 5538 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Vmn1r90-201ENSMUST00000185220 7144 ntAPPRIS P2 BASIC8.09□□□□□ -1.11
Hmgb3O54879 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Gm26574-201ENSMUST00000181876 2141 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Ap5m1-201ENSMUST00000037473 6321 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 A930005G22Rik-201ENSMUST00000201293 1904 ntBASIC8.09□□□□□ -1.11
Hmgb3O54879 Zfp112-202ENSMUST00000120006 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Tmem30c-203ENSMUST00000120112 3478 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Nup107-201ENSMUST00000064848 3114 ntAPPRIS P2 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Gm42858-201ENSMUST00000202512 1704 ntBASIC8.09□□□□□ -1.11
Hmgb3O54879 Pfkfb2-201ENSMUST00000050406 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.11
Hmgb3O54879 Golgb1-203ENSMUST00000114812 11012 ntAPPRIS ALT2 TSL 5 BASIC8.09□□□□□ -1.12
Hmgb3O54879 Gpm6b-208ENSMUST00000112233 2949 ntTSL 1 (best) BASIC8.09□□□□□ -1.12
Hmgb3O54879 Gm12912-201ENSMUST00000121596 1381 ntBASIC8.09□□□□□ -1.12
Hmgb3O54879 Gm42714-201ENSMUST00000202063 1364 ntBASIC8.09□□□□□ -1.12
Hmgb3O54879 Gm8634-201ENSMUST00000222547 1367 ntBASIC8.09□□□□□ -1.12
Hmgb3O54879 Gm36752-201ENSMUST00000220527 1546 ntTSL 5 BASIC8.08□□□□□ -1.12
Hmgb3O54879 Pabpc4l-201ENSMUST00000166505 5218 ntAPPRIS P1 TSL 2 BASIC8.08□□□□□ -1.12
Hmgb3O54879 Gm43336-201ENSMUST00000200487 4504 ntBASIC8.08□□□□□ -1.12
Hmgb3O54879 Gm10790-202ENSMUST00000221285 1696 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Nrxn3-203ENSMUST00000110133 2699 ntTSL 5 BASIC8.08□□□□□ -1.12
Hmgb3O54879 Olfr1199-204ENSMUST00000213138 2657 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
Hmgb3O54879 Sp3-201ENSMUST00000066003 3808 ntAPPRIS ALT2 TSL 5 BASIC8.08□□□□□ -1.12
Hmgb3O54879 1600029O15Rik-202ENSMUST00000179787 1809 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Dnmt3b-207ENSMUST00000109771 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Parvb-201ENSMUST00000023072 3784 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Rbm8a-201ENSMUST00000048915 2608 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Ezh2-202ENSMUST00000092648 2115 ntTSL 5 BASIC8.08□□□□□ -1.12
Hmgb3O54879 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 G3bp2-201ENSMUST00000113127 4182 ntAPPRIS ALT1 TSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Tmem74bos-202ENSMUST00000149319 2090 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Nppa-201ENSMUST00000103230 865 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Rpl17-ps1-201ENSMUST00000119156 552 ntBASIC8.08□□□□□ -1.12
Hmgb3O54879 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC8.08□□□□□ -1.12
Hmgb3O54879 Gm12733-201ENSMUST00000119871 767 ntBASIC8.08□□□□□ -1.12
Hmgb3O54879 Gm16234-201ENSMUST00000124976 815 ntTSL 5 BASIC8.08□□□□□ -1.12
Hmgb3O54879 Gm16288-201ENSMUST00000137940 367 ntBASIC8.08□□□□□ -1.12
Hmgb3O54879 Lsm6-204ENSMUST00000146824 541 ntAPPRIS P1 TSL 2 BASIC8.08□□□□□ -1.12
Hmgb3O54879 Atad3aos-202ENSMUST00000150777 650 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC8.08□□□□□ -1.12
Hmgb3O54879 Use1-201ENSMUST00000019169 854 ntAPPRIS P3 TSL 1 (best) BASIC8.08□□□□□ -1.12
Retrieved 100 of 76,532 protein–RNA pairs in 54.8 ms