Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm34780-201ENSMUST00000193896 949 ntBASIC11.58□□□□□ -0.56
Traf1P39428 Gm6370-202ENSMUST00000198912 1017 ntAPPRIS ALT2 TSL 3 BASIC11.58□□□□□ -0.56
Traf1P39428 Mrpl23-207ENSMUST00000210803 590 ntTSL 3 BASIC11.58□□□□□ -0.56
Traf1P39428 Gimd1-205ENSMUST00000212852 1234 ntTSL 5 BASIC11.58□□□□□ -0.56
Traf1P39428 Ang2-202ENSMUST00000228835 896 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
Traf1P39428 Stra6-201ENSMUST00000034880 2993 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Traf1P39428 Mcpt4-201ENSMUST00000043249 1108 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Traf1P39428 1700063H04Rik-201ENSMUST00000043553 817 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Traf1P39428 Gm16387-201ENSMUST00000180990 2632 ntBASIC11.58□□□□□ -0.56
Traf1P39428 Ctc1-202ENSMUST00000116359 3978 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Traf1P39428 Spata16-201ENSMUST00000047005 2022 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Traf1P39428 Prkx-201ENSMUST00000036333 4146 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Traf1P39428 Scmh1-202ENSMUST00000064991 2548 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Traf1P39428 Gm37593-201ENSMUST00000191669 3254 ntBASIC11.58□□□□□ -0.56
Traf1P39428 Slco5a1-205ENSMUST00000146763 3437 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Traf1P39428 Mgat5-201ENSMUST00000038361 8436 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Traf1P39428 Pcdh15-233ENSMUST00000191709 5346 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Traf1P39428 Sh3glb1-204ENSMUST00000199531 2584 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Traf1P39428 Rnh1-201ENSMUST00000106033 2091 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Traf1P39428 Pde9a-206ENSMUST00000134525 1818 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Traf1P39428 AU015228-201ENSMUST00000121103 1320 ntBASIC11.58□□□□□ -0.56
Traf1P39428 Gm3139-202ENSMUST00000201138 1303 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Traf1P39428 Gm3183-203ENSMUST00000202911 1303 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Traf1P39428 L1cam-203ENSMUST00000114430 5126 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Traf1P39428 Gm43660-201ENSMUST00000200956 6548 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Traf1P39428 Pabpc5-202ENSMUST00000113366 2243 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Traf1P39428 Pcdh15-207ENSMUST00000124046 5336 ntTSL 5 BASIC11.57□□□□□ -0.56
Traf1P39428 Gm10748-202ENSMUST00000194396 2379 ntBASIC11.57□□□□□ -0.56
Traf1P39428 Myh9-201ENSMUST00000016771 7433 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Arhgef9-204ENSMUST00000113882 2445 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
Traf1P39428 Sema4g-201ENSMUST00000026225 4548 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Trim69-201ENSMUST00000036089 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Il12rb2-201ENSMUST00000018485 2998 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Il17rd-201ENSMUST00000035336 8280 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Mybpc3-201ENSMUST00000111430 4154 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
Traf1P39428 Gm42962-201ENSMUST00000201966 2325 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Brpf1-208ENSMUST00000203577 4468 ntTSL 5 BASIC11.57□□□□□ -0.56
Traf1P39428 Svil-204ENSMUST00000127297 6243 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
Traf1P39428 Tnnt3-213ENSMUST00000105952 1040 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Tnnt3-214ENSMUST00000105953 1049 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Tnnt3-215ENSMUST00000105954 1052 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Tnnt3-216ENSMUST00000105955 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Tnnt3-218ENSMUST00000105958 1050 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Gm13413-201ENSMUST00000120953 602 ntBASIC11.57□□□□□ -0.56
Traf1P39428 Bola3-203ENSMUST00000122216 554 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Cd209b-203ENSMUST00000171635 1000 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Mir3091-201ENSMUST00000175086 76 ntBASIC11.57□□□□□ -0.56
Traf1P39428 Tnnt3-225ENSMUST00000179658 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Gm4398-201ENSMUST00000182698 992 ntBASIC11.57□□□□□ -0.56
Traf1P39428 Gm37976-201ENSMUST00000193827 345 ntBASIC11.57□□□□□ -0.56
Traf1P39428 Gm7815-201ENSMUST00000196104 832 ntBASIC11.57□□□□□ -0.56
Traf1P39428 Gm8960-201ENSMUST00000219787 788 ntBASIC11.57□□□□□ -0.56
Traf1P39428 AC119177.2-201ENSMUST00000226699 629 ntBASIC11.57□□□□□ -0.56
Traf1P39428 Opn1mw-201ENSMUST00000033771 1227 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Tnnt3-202ENSMUST00000078497 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Olfr1115-201ENSMUST00000081986 1102 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
Traf1P39428 Gm23458-201ENSMUST00000083257 169 ntBASIC11.57□□□□□ -0.56
Traf1P39428 1700029F12Rik-201ENSMUST00000091377 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Mir341-201ENSMUST00000093593 96 ntBASIC11.57□□□□□ -0.56
Traf1P39428 Eef2k-204ENSMUST00000106489 3047 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Gm19557-201ENSMUST00000182109 2765 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Il1f5-206ENSMUST00000168941 1722 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Traf1P39428 Kir3dl2-201ENSMUST00000072125 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Gpr155-204ENSMUST00000112044 4201 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
Traf1P39428 Zmym6-201ENSMUST00000046751 4210 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Mtbp-201ENSMUST00000022998 3144 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Tmem63a-205ENSMUST00000161523 3258 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Plxna3-201ENSMUST00000004326 6943 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Kif4-201ENSMUST00000048962 4983 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Traf1P39428 Sorbs1-201ENSMUST00000099466 2223 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Traf1P39428 Tnfaip8-212ENSMUST00000179937 2385 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Traf1P39428 Ilf3-213ENSMUST00000216892 3684 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Traf1P39428 Ccdc40-201ENSMUST00000035935 4979 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Traf1P39428 Gm37036-201ENSMUST00000192836 2506 ntBASIC11.56□□□□□ -0.56
Traf1P39428 Gm43086-201ENSMUST00000202536 2657 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Traf1P39428 AC110091.2-201ENSMUST00000215107 1512 ntTSL 5 BASIC11.56□□□□□ -0.56
Traf1P39428 Spz1-201ENSMUST00000050658 1537 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
Traf1P39428 Gpm6b-205ENSMUST00000112227 3294 ntAPPRIS ALT1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Traf1P39428 Gm38199-201ENSMUST00000192013 3277 ntBASIC11.56□□□□□ -0.56
Traf1P39428 Dglucy-201ENSMUST00000069782 3295 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Traf1P39428 Prune2-202ENSMUST00000223920 1803 ntBASIC11.56□□□□□ -0.56
Traf1P39428 Ccdc87-201ENSMUST00000088653 3163 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
Traf1P39428 Gm24161-201ENSMUST00000104592 130 ntBASIC11.56□□□□□ -0.56
Traf1P39428 Grb2-204ENSMUST00000106499 2333 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Traf1P39428 Calr4-204ENSMUST00000106631 2155 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Traf1P39428 0610037L13Rik-203ENSMUST00000106726 515 ntTSL 5 BASIC11.56□□□□□ -0.56
Traf1P39428 Ppp1r2-ps4-201ENSMUST00000112182 633 ntBASIC11.56□□□□□ -0.56
Traf1P39428 Gm14138-201ENSMUST00000122061 745 ntBASIC11.56□□□□□ -0.56
Traf1P39428 Gm829-201ENSMUST00000123741 465 ntTSL 3 BASIC11.56□□□□□ -0.56
Traf1P39428 6330418K02Rik-202ENSMUST00000125662 1267 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Traf1P39428 Gm15423-201ENSMUST00000150600 1430 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Traf1P39428 1700026D11Rik-205ENSMUST00000151417 789 ntTSL 3 BASIC11.56□□□□□ -0.56
Traf1P39428 Gm8425-201ENSMUST00000171395 769 ntBASIC11.56□□□□□ -0.56
Traf1P39428 Gm10045-201ENSMUST00000178657 483 ntBASIC11.56□□□□□ -0.56
Traf1P39428 Gm17250-201ENSMUST00000180494 1010 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Traf1P39428 Gm28381-201ENSMUST00000188403 193 ntBASIC11.56□□□□□ -0.56
Traf1P39428 A930036I15Rik-201ENSMUST00000196018 1045 ntBASIC11.56□□□□□ -0.56
Traf1P39428 Gm6073-201ENSMUST00000198253 466 ntBASIC11.56□□□□□ -0.56
Traf1P39428 Olfr139-203ENSMUST00000206280 1059 ntAPPRIS P1 TSL 3 BASIC11.56□□□□□ -0.56
Traf1P39428 Gm44716-201ENSMUST00000209007 710 ntBASIC11.56□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms