Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cux1P53564 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cux1P53564 Smok3a-202ENSMUST00000171498 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cux1P53564 Gm12751-201ENSMUST00000122336 381 ntBASIC15.12■□□□□ 0.01
Cux1P53564 Gm14010-201ENSMUST00000131961 374 ntTSL 2 BASIC15.12■□□□□ 0.01
Cux1P53564 4930444E06Rik-201ENSMUST00000146746 1240 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cux1P53564 Gm11464-201ENSMUST00000146963 537 ntTSL 5 BASIC15.12■□□□□ 0.01
Cux1P53564 Ly6g6e-202ENSMUST00000172494 464 ntTSL 3 BASIC15.12■□□□□ 0.01
Cux1P53564 n-R5s210-201ENSMUST00000177688 119 ntBASIC15.12■□□□□ 0.01
Cux1P53564 Zfp87-203ENSMUST00000181573 382 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cux1P53564 Gm45151-201ENSMUST00000205445 712 ntTSL 2 BASIC15.12■□□□□ 0.01
Cux1P53564 Gm45014-201ENSMUST00000207657 405 ntTSL 3 BASIC15.12■□□□□ 0.01
Cux1P53564 Rps6ka6-202ENSMUST00000082034 4170 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
Cux1P53564 Polr3f-202ENSMUST00000110017 1632 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Cux1P53564 March10-204ENSMUST00000138977 2979 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Cux1P53564 AU019823-201ENSMUST00000131351 3316 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cux1P53564 Clcn4-201ENSMUST00000000619 4607 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cux1P53564 Gm14653-201ENSMUST00000122069 1533 ntBASIC15.11■□□□□ 0.01
Cux1P53564 Gm29427-201ENSMUST00000188520 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cux1P53564 CK137956-201ENSMUST00000030614 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cux1P53564 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Cux1P53564 Tnfrsf8-201ENSMUST00000030339 3414 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cux1P53564 Pmel-201ENSMUST00000054125 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cux1P53564 Myo1b-201ENSMUST00000018561 4767 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cux1P53564 Odf2-209ENSMUST00000113764 2450 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
Cux1P53564 Slc38a3-202ENSMUST00000167868 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cux1P53564 Cuta-202ENSMUST00000114935 597 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cux1P53564 Gm11199-201ENSMUST00000118691 507 ntBASIC15.11■□□□□ 0.01
Cux1P53564 Gm14225-201ENSMUST00000142310 539 ntTSL 2 BASIC15.11■□□□□ 0.01
Cux1P53564 Il19-204ENSMUST00000187916 720 ntTSL 2 BASIC15.11■□□□□ 0.01
Cux1P53564 Gm34727-201ENSMUST00000195175 529 ntBASIC15.11■□□□□ 0.01
Cux1P53564 Zim2-202ENSMUST00000203572 1158 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Cux1P53564 Gm30052-201ENSMUST00000211951 913 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Cux1P53564 AC158531.1-201ENSMUST00000224617 457 ntBASIC15.11■□□□□ 0.01
Cux1P53564 AC102000.1-201ENSMUST00000226247 727 ntBASIC15.11■□□□□ 0.01
Cux1P53564 Olfr1393-201ENSMUST00000078932 936 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Cux1P53564 Magea8-201ENSMUST00000070141 1646 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cux1P53564 Rhag-201ENSMUST00000024721 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cux1P53564 Myrf-205ENSMUST00000189897 3339 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
Cux1P53564 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Cux1P53564 Trim34a-203ENSMUST00000106849 2578 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cux1P53564 Gm42031-201ENSMUST00000209823 1885 ntTSL 5 BASIC15.11■□□□□ 0.01
Cux1P53564 Armc3-202ENSMUST00000114640 2818 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cux1P53564 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cux1P53564 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Cux1P53564 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Cux1P53564 5330439K02Rik-201ENSMUST00000180953 2312 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cux1P53564 Strip2-202ENSMUST00000115224 3524 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cux1P53564 Ywhag-201ENSMUST00000055808 3520 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cux1P53564 Odf2l-202ENSMUST00000098538 2564 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cux1P53564 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cux1P53564 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cux1P53564 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cux1P53564 Gm43593-201ENSMUST00000198605 1346 ntBASIC15.1■□□□□ 0.01
Cux1P53564 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Cux1P53564 Rita1-202ENSMUST00000111884 733 ntTSL 2 BASIC15.1■□□□□ 0.01
Cux1P53564 Gps2-203ENSMUST00000116358 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cux1P53564 Gm14630-201ENSMUST00000118057 246 ntBASIC15.1■□□□□ 0.01
Cux1P53564 Fthl17-ps1-201ENSMUST00000120058 516 ntBASIC15.1■□□□□ 0.01
Cux1P53564 Olfr271-ps1-201ENSMUST00000121614 952 ntBASIC15.1■□□□□ 0.01
Cux1P53564 Gm20821-201ENSMUST00000179829 1153 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Cux1P53564 Gm20854-202ENSMUST00000181549 1156 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Cux1P53564 Gm27913-201ENSMUST00000184473 173 ntBASIC15.1■□□□□ 0.01
Cux1P53564 Gm20844-201ENSMUST00000186101 654 ntBASIC15.1■□□□□ 0.01
Cux1P53564 Gm20921-201ENSMUST00000188265 652 ntBASIC15.1■□□□□ 0.01
Cux1P53564 Gm30173-201ENSMUST00000195035 1128 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cux1P53564 Gm44341-201ENSMUST00000196168 138 ntBASIC15.1■□□□□ 0.01
Cux1P53564 AC125099.1-201ENSMUST00000197780 138 ntBASIC15.1■□□□□ 0.01
Cux1P53564 AC125099.2-201ENSMUST00000198228 138 ntBASIC15.1■□□□□ 0.01
Cux1P53564 Gm45349-201ENSMUST00000210285 1074 ntTSL 5 BASIC15.1■□□□□ 0.01
Cux1P53564 AC159899.1-201ENSMUST00000214024 733 ntBASIC15.1■□□□□ 0.01
Cux1P53564 Olfr271-ps1-202ENSMUST00000217546 852 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Cux1P53564 Gm29794-201ENSMUST00000218919 1247 ntBASIC15.1■□□□□ 0.01
Cux1P53564 D030028A08Rik-202ENSMUST00000131501 3542 ntTSL 2 BASIC15.1■□□□□ 0.01
Cux1P53564 Cntnap2-201ENSMUST00000060839 1540 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cux1P53564 4833412K13Rik-201ENSMUST00000195509 1479 ntBASIC15.1■□□□□ 0.01
Cux1P53564 Gm10251-202ENSMUST00000181786 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cux1P53564 Tmem255a-201ENSMUST00000066498 3380 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cux1P53564 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cux1P53564 Bcl2l14-202ENSMUST00000111960 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cux1P53564 Gm34785-201ENSMUST00000222571 4582 ntTSL 5 BASIC15.09■□□□□ 0.01
Cux1P53564 Gpr75-201ENSMUST00000109430 2926 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cux1P53564 Gm12318-201ENSMUST00000121235 273 ntBASIC15.09■□□□□ 0.01
Cux1P53564 Gm12133-201ENSMUST00000121775 661 ntBASIC15.09■□□□□ 0.01
Cux1P53564 Gm17033-201ENSMUST00000146663 593 ntTSL 3 BASIC15.09■□□□□ 0.01
Cux1P53564 Gm11789-205ENSMUST00000148579 649 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cux1P53564 Ciao1-205ENSMUST00000174863 531 ntTSL 5 BASIC15.09■□□□□ 0.01
Cux1P53564 Gm8957-201ENSMUST00000182082 1012 ntBASIC15.09■□□□□ 0.01
Cux1P53564 H2al1a-201ENSMUST00000188439 501 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Cux1P53564 Gm37643-201ENSMUST00000195369 1260 ntBASIC15.09■□□□□ 0.01
Cux1P53564 AC160931.1-201ENSMUST00000223298 413 ntTSL 3 BASIC15.09■□□□□ 0.01
Cux1P53564 Defa32-201ENSMUST00000084041 425 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cux1P53564 Defa20-201ENSMUST00000084042 425 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cux1P53564 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cux1P53564 Ppat-202ENSMUST00000140076 3981 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cux1P53564 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cux1P53564 Ets2-201ENSMUST00000023612 3890 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cux1P53564 Vil1-201ENSMUST00000027366 3124 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cux1P53564 Snw1-201ENSMUST00000021428 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cux1P53564 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 135.8 ms