Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Zfp775-203ENSMUST00000204095 4143 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
Traf1P39428 Prkcd-208ENSMUST00000112211 2851 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Traf1P39428 4933436P19Rik-201ENSMUST00000217736 1442 ntBASIC11.67□□□□□ -0.54
Traf1P39428 Tnip1-205ENSMUST00000108886 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 Rims1-203ENSMUST00000097809 6179 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Traf1P39428 Ndrg4-202ENSMUST00000073139 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 Cdh18-207ENSMUST00000226693 2165 ntBASIC11.67□□□□□ -0.54
Traf1P39428 Pla2g2d-201ENSMUST00000030528 2167 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 Ik-201ENSMUST00000007042 1996 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 Echdc1-201ENSMUST00000020034 3856 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Tsix-202ENSMUST00000211291 3263 ntTSL 5 BASIC11.66□□□□□ -0.54
Traf1P39428 Blnk-202ENSMUST00000117695 1701 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Dhx34-207ENSMUST00000163968 3801 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Gm42974-201ENSMUST00000199556 2654 ntBASIC11.66□□□□□ -0.54
Traf1P39428 Gm37583-201ENSMUST00000195460 2487 ntBASIC11.66□□□□□ -0.54
Traf1P39428 Adcy4-201ENSMUST00000002398 3444 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Gm14538-201ENSMUST00000122019 1327 ntBASIC11.66□□□□□ -0.54
Traf1P39428 Gpm6b-204ENSMUST00000112226 3174 ntAPPRIS ALT1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 5830473C10Rik-202ENSMUST00000200765 1691 ntTSL 5 BASIC11.66□□□□□ -0.54
Traf1P39428 Gm9864-201ENSMUST00000090043 1656 ntBASIC11.66□□□□□ -0.54
Traf1P39428 Zscan21-203ENSMUST00000110959 2964 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Mindy4-201ENSMUST00000053094 4270 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 5830411N06Rik-203ENSMUST00000164583 3342 ntAPPRIS P4 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Cped1-201ENSMUST00000115382 2002 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Traf1P39428 Trim17-201ENSMUST00000047697 3664 ntTSL 2 BASIC11.66□□□□□ -0.54
Traf1P39428 Zfyve1-201ENSMUST00000048319 4036 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Gm5046-201ENSMUST00000100608 611 ntBASIC11.66□□□□□ -0.54
Traf1P39428 Gm13192-201ENSMUST00000101199 208 ntBASIC11.66□□□□□ -0.54
Traf1P39428 Gm10443-201ENSMUST00000119024 210 ntBASIC11.66□□□□□ -0.54
Traf1P39428 Gm12420-201ENSMUST00000119869 1048 ntBASIC11.66□□□□□ -0.54
Traf1P39428 Gm13624-201ENSMUST00000120263 462 ntBASIC11.66□□□□□ -0.54
Traf1P39428 Oosp2-201ENSMUST00000121793 677 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Gm13781-201ENSMUST00000124153 492 ntTSL 2 BASIC11.66□□□□□ -0.54
Traf1P39428 Gm16131-201ENSMUST00000131007 659 ntTSL 3 BASIC11.66□□□□□ -0.54
Traf1P39428 Gm28309-201ENSMUST00000136302 623 ntTSL 5 BASIC11.66□□□□□ -0.54
Traf1P39428 Pla2g1b-204ENSMUST00000145785 419 ntTSL 5 BASIC11.66□□□□□ -0.54
Traf1P39428 Gm15419-201ENSMUST00000148654 743 ntTSL 3 BASIC11.66□□□□□ -0.54
Traf1P39428 Osgep-207ENSMUST00000162177 1219 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Gm17058-201ENSMUST00000168951 928 ntTSL 5 BASIC11.66□□□□□ -0.54
Traf1P39428 Siglech-208ENSMUST00000173835 833 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Gm25953-201ENSMUST00000175338 83 ntBASIC11.66□□□□□ -0.54
Traf1P39428 1110020A21Rik-201ENSMUST00000181147 853 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Gm6463-201ENSMUST00000182090 966 ntBASIC11.66□□□□□ -0.54
Traf1P39428 Gm8955-201ENSMUST00000182945 1008 ntBASIC11.66□□□□□ -0.54
Traf1P39428 Gm6317-201ENSMUST00000183159 1000 ntBASIC11.66□□□□□ -0.54
Traf1P39428 Tdrkh-203ENSMUST00000196386 1050 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Gm3945-201ENSMUST00000196637 683 ntBASIC11.66□□□□□ -0.54
Traf1P39428 Gm20568-201ENSMUST00000197129 208 ntBASIC11.66□□□□□ -0.54
Traf1P39428 Gm40153-201ENSMUST00000197904 637 ntTSL 3 BASIC11.66□□□□□ -0.54
Traf1P39428 AC157931.1-201ENSMUST00000198565 346 ntAPPRIS P1 TSL 3 BASIC11.66□□□□□ -0.54
Traf1P39428 Gm30652-201ENSMUST00000199103 430 ntBASIC11.66□□□□□ -0.54
Traf1P39428 2610318N02Rik-202ENSMUST00000207116 1156 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 AC121357.1-201ENSMUST00000227365 608 ntBASIC11.66□□□□□ -0.54
Traf1P39428 Gzmf-201ENSMUST00000022757 919 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Gzmk-201ENSMUST00000038212 1028 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Rpl37-201ENSMUST00000045356 835 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Tex46-201ENSMUST00000046647 683 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Exoc7-203ENSMUST00000106413 3298 ntAPPRIS ALT1 TSL 5 BASIC11.66□□□□□ -0.54
Traf1P39428 Ccdc93-201ENSMUST00000036025 7274 ntAPPRIS P4 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Rgs12-204ENSMUST00000114281 3439 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Lhfpl2-201ENSMUST00000054274 4348 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Tjp1-201ENSMUST00000032729 6102 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Lss-201ENSMUST00000048678 4667 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Mical1-201ENSMUST00000019967 3563 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Gm8806-201ENSMUST00000120076 1407 ntBASIC11.66□□□□□ -0.54
Traf1P39428 Zfp398-202ENSMUST00000114598 8328 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Klf8-201ENSMUST00000039545 4407 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Ahrr-201ENSMUST00000022059 4754 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Zfr-201ENSMUST00000122941 4850 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Ctsa-202ENSMUST00000103092 3646 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Traf1P39428 Asb1-201ENSMUST00000027538 5826 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 AC122293.1-201ENSMUST00000218333 2231 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Adgra1-201ENSMUST00000026548 4758 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Traf1P39428 Stra6-213ENSMUST00000167479 2871 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Traf1P39428 Mllt3-201ENSMUST00000078090 6069 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Traf1P39428 Gne-201ENSMUST00000030201 5384 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Traf1P39428 Plekha6-201ENSMUST00000038295 7388 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Traf1P39428 Jmjd4-201ENSMUST00000045279 4315 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Traf1P39428 Exoc7-201ENSMUST00000021147 3337 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Traf1P39428 Zfp317-205ENSMUST00000215372 2809 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Traf1P39428 Srpk1-204ENSMUST00000130643 4465 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Traf1P39428 Il10-201ENSMUST00000016673 1310 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Traf1P39428 Dnm2-202ENSMUST00000091087 3450 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Traf1P39428 Ndrg4-201ENSMUST00000041318 3101 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Traf1P39428 Prdx3-201ENSMUST00000025961 1478 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Traf1P39428 Hectd4-201ENSMUST00000042614 15482 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Traf1P39428 Tmem150c-201ENSMUST00000063192 3084 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Traf1P39428 Ahrr-202ENSMUST00000109640 2419 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Traf1P39428 Bbs7-201ENSMUST00000040148 2599 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Traf1P39428 Gm20715-201ENSMUST00000054781 4460 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
Traf1P39428 Gm16439-201ENSMUST00000100687 564 ntBASIC11.65□□□□□ -0.54
Traf1P39428 Gm13397-201ENSMUST00000119562 878 ntBASIC11.65□□□□□ -0.54
Traf1P39428 Gm15798-201ENSMUST00000120082 408 ntBASIC11.65□□□□□ -0.54
Traf1P39428 Pcsk2os1-202ENSMUST00000156780 527 ntTSL 3 BASIC11.65□□□□□ -0.54
Traf1P39428 Gm26716-201ENSMUST00000181227 415 ntTSL 5 BASIC11.65□□□□□ -0.54
Traf1P39428 Ndufc1-204ENSMUST00000193279 315 ntAPPRIS P1 TSL 3 BASIC11.65□□□□□ -0.54
Traf1P39428 Gm7812-201ENSMUST00000203479 874 ntBASIC11.65□□□□□ -0.54
Traf1P39428 Zfp787-203ENSMUST00000207331 376 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Traf1P39428 Cryab-206ENSMUST00000217475 1117 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Traf1P39428 Galp-201ENSMUST00000037553 650 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 52 ms