Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Speer4c-201ENSMUST00000095005 1159 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
Hmgb3O54879 Speer4d-201ENSMUST00000095006 1194 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
Hmgb3O54879 Crb1-201ENSMUST00000059825 5901 ntAPPRIS P2 TSL 1 (best) BASIC8.18□□□□□ -1.1
Hmgb3O54879 Pitrm1-201ENSMUST00000021611 3318 ntAPPRIS ALT2 TSL 1 (best) BASIC8.18□□□□□ -1.1
Hmgb3O54879 Tec-201ENSMUST00000071944 2659 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
Hmgb3O54879 Aldob-201ENSMUST00000029987 2016 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
Hmgb3O54879 Gm44975-201ENSMUST00000207435 1390 ntBASIC8.18□□□□□ -1.1
Hmgb3O54879 Srgap1-201ENSMUST00000020322 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC8.18□□□□□ -1.1
Hmgb3O54879 Rtel1-204ENSMUST00000108814 4322 ntAPPRIS ALT2 TSL 1 (best) BASIC8.18□□□□□ -1.1
Hmgb3O54879 Kcna2-201ENSMUST00000038695 11582 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
Hmgb3O54879 1810019N24Rik-201ENSMUST00000181128 1474 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
Hmgb3O54879 Olfr73-202ENSMUST00000129056 3048 ntAPPRIS P1 TSL 2 BASIC8.18□□□□□ -1.1
Hmgb3O54879 Slc23a1-201ENSMUST00000025212 3026 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
Hmgb3O54879 Gm44106-201ENSMUST00000203153 1599 ntBASIC8.18□□□□□ -1.1
Hmgb3O54879 Dhrs7b-201ENSMUST00000042281 1553 ntAPPRIS P2 TSL 1 (best) BASIC8.18□□□□□ -1.1
Hmgb3O54879 Brd9-201ENSMUST00000099384 2407 ntAPPRIS P2 TSL 1 (best) BASIC8.18□□□□□ -1.1
Hmgb3O54879 Ttc16-205ENSMUST00000161089 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Klf8-201ENSMUST00000039545 4407 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Cdon-201ENSMUST00000042842 7213 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm30373-202ENSMUST00000217507 2709 ntTSL 5 BASIC8.17□□□□□ -1.1
Hmgb3O54879 Rnf43-201ENSMUST00000040089 3670 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm38001-201ENSMUST00000192900 3761 ntBASIC8.17□□□□□ -1.1
Hmgb3O54879 Cnr2-201ENSMUST00000068830 3756 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Fhod1-201ENSMUST00000014922 3928 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Cntln-203ENSMUST00000107190 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm37464-201ENSMUST00000192431 2220 ntBASIC8.17□□□□□ -1.1
Hmgb3O54879 Srsf7-201ENSMUST00000063417 2279 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Pnpla7-201ENSMUST00000045295 4574 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm37039-201ENSMUST00000193733 2485 ntBASIC8.17□□□□□ -1.1
Hmgb3O54879 Tstd2-202ENSMUST00000107772 3726 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Igkv3-9-201ENSMUST00000103398 359 ntAPPRIS P1 BASIC8.17□□□□□ -1.1
Hmgb3O54879 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm8482-201ENSMUST00000117972 471 ntBASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm13841-201ENSMUST00000118829 483 ntBASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm11449-201ENSMUST00000119175 476 ntBASIC8.17□□□□□ -1.1
Hmgb3O54879 Aamdc-203ENSMUST00000124552 618 ntTSL 3 BASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm11465-201ENSMUST00000127942 435 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm13027-201ENSMUST00000135858 241 ntTSL 5 BASIC8.17□□□□□ -1.1
Hmgb3O54879 Fam229b-208ENSMUST00000139743 679 ntAPPRIS P1 TSL 5 BASIC8.17□□□□□ -1.1
Hmgb3O54879 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm25732-201ENSMUST00000175168 60 ntBASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm8210-201ENSMUST00000178557 483 ntBASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm15454-201ENSMUST00000179718 483 ntBASIC8.17□□□□□ -1.1
Hmgb3O54879 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm5801-201ENSMUST00000182247 780 ntBASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC8.17□□□□□ -1.1
Hmgb3O54879 4930553I21Rik-201ENSMUST00000214016 580 ntBASIC8.17□□□□□ -1.1
Hmgb3O54879 AC165249.1-202ENSMUST00000217990 734 ntTSL 3 BASIC8.17□□□□□ -1.1
Hmgb3O54879 AC115304.2-201ENSMUST00000226399 332 ntBASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm6960-201ENSMUST00000051629 639 ntBASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm6344-201ENSMUST00000075962 483 ntBASIC8.17□□□□□ -1.1
Hmgb3O54879 Babam2-202ENSMUST00000071531 1308 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Sspo-206ENSMUST00000212740 15408 ntAPPRIS ALT2 TSL 5 BASIC8.17□□□□□ -1.1
Hmgb3O54879 Sox2ot-211ENSMUST00000197977 2970 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Kctd19-201ENSMUST00000063071 3048 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Trim17-202ENSMUST00000075141 3028 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Zfp14-201ENSMUST00000077787 1506 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm37125-201ENSMUST00000195877 1559 ntBASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm7823-201ENSMUST00000120761 1623 ntBASIC8.17□□□□□ -1.1
Hmgb3O54879 Siglech-203ENSMUST00000121492 1655 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 AC158777.1-201ENSMUST00000226216 1724 ntBASIC8.17□□□□□ -1.1
Hmgb3O54879 Olfr156-201ENSMUST00000079234 1740 ntAPPRIS P1 TSL 5 BASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm36958-201ENSMUST00000192388 1875 ntBASIC8.17□□□□□ -1.1
Hmgb3O54879 Armcx2-207ENSMUST00000168264 3773 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Prokr2-202ENSMUST00000110156 3829 ntAPPRIS P1 TSL 5 BASIC8.17□□□□□ -1.1
Hmgb3O54879 Cnbd2-203ENSMUST00000109580 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Aldh1l1-203ENSMUST00000130418 4175 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Apbb2-204ENSMUST00000159786 6333 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 Ankrd6-205ENSMUST00000108166 2321 ntTSL 5 BASIC8.17□□□□□ -1.1
Hmgb3O54879 Mettl8-204ENSMUST00000112186 2347 ntAPPRIS P2 TSL 2 BASIC8.17□□□□□ -1.1
Hmgb3O54879 Plag1-201ENSMUST00000003369 4774 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
Hmgb3O54879 BC030343-201ENSMUST00000199606 2439 ntBASIC8.17□□□□□ -1.1
Hmgb3O54879 Gm15666-202ENSMUST00000219490 2796 ntBASIC8.16□□□□□ -1.1
Hmgb3O54879 Pcdh17-201ENSMUST00000071370 11451 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
Hmgb3O54879 CT010575.1-201ENSMUST00000220666 2924 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
Hmgb3O54879 Zkscan8-201ENSMUST00000045228 8805 ntAPPRIS P2 TSL 1 (best) BASIC8.16□□□□□ -1.1
Hmgb3O54879 Gm44168-201ENSMUST00000204835 3539 ntBASIC8.16□□□□□ -1.1
Hmgb3O54879 Gfm2-209ENSMUST00000161825 4416 ntTSL 2 BASIC8.16□□□□□ -1.1
Hmgb3O54879 Vsir-202ENSMUST00000105459 1290 ntTSL 5 BASIC8.16□□□□□ -1.1
Hmgb3O54879 Unc13d-203ENSMUST00000106451 3973 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
Hmgb3O54879 Hsd3b1-202ENSMUST00000107016 1855 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
Hmgb3O54879 Gsg1-204ENSMUST00000111911 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
Hmgb3O54879 Sytl4-202ENSMUST00000113294 2958 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
Hmgb3O54879 Fam3a-204ENSMUST00000114141 1243 ntTSL 5 BASIC8.16□□□□□ -1.1
Hmgb3O54879 Gm13914-201ENSMUST00000118202 991 ntBASIC8.16□□□□□ -1.1
Hmgb3O54879 Eef1akmt4-202ENSMUST00000119224 1464 ntTSL 2 BASIC8.16□□□□□ -1.1
Hmgb3O54879 Gm16071-201ENSMUST00000119589 793 ntBASIC8.16□□□□□ -1.1
Hmgb3O54879 Gm13169-201ENSMUST00000122090 1459 ntBASIC8.16□□□□□ -1.1
Hmgb3O54879 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC8.16□□□□□ -1.1
Hmgb3O54879 Gm25554-201ENSMUST00000158075 113 ntBASIC8.16□□□□□ -1.1
Hmgb3O54879 Gm26208-201ENSMUST00000158677 124 ntBASIC8.16□□□□□ -1.1
Hmgb3O54879 Mir1938-201ENSMUST00000158746 100 ntBASIC8.16□□□□□ -1.1
Hmgb3O54879 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC8.16□□□□□ -1.1
Hmgb3O54879 Gm9574-201ENSMUST00000173127 845 ntBASIC8.16□□□□□ -1.1
Hmgb3O54879 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC8.16□□□□□ -1.1
Hmgb3O54879 Gm20400-201ENSMUST00000173695 665 ntTSL 3 BASIC8.16□□□□□ -1.1
Hmgb3O54879 Rn7s6-201ENSMUST00000175005 291 ntBASIC8.16□□□□□ -1.1
Hmgb3O54879 Gm16938-201ENSMUST00000180517 464 ntTSL 5 BASIC8.16□□□□□ -1.1
Retrieved 100 of 76,532 protein–RNA pairs in 146 ms