Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc28bQ8CEG5 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc28bQ8CEG5 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc28bQ8CEG5 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc28bQ8CEG5 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc28bQ8CEG5 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc28bQ8CEG5 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc28bQ8CEG5 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc28bQ8CEG5 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ccdc28bQ8CEG5 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ccdc28bQ8CEG5 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
Ccdc28bQ8CEG5 Gm19439-201ENSMUST00000198195 2273 ntBASIC19.36■□□□□ 0.69
Ccdc28bQ8CEG5 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.36■□□□□ 0.69
Ccdc28bQ8CEG5 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ccdc28bQ8CEG5 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC19.36■□□□□ 0.69
Ccdc28bQ8CEG5 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Ccdc28bQ8CEG5 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Ccdc28bQ8CEG5 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Ccdc28bQ8CEG5 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Ccdc28bQ8CEG5 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC19.36■□□□□ 0.69
Ccdc28bQ8CEG5 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ccdc28bQ8CEG5 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ccdc28bQ8CEG5 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 AC126028.2-201ENSMUST00000228100 1833 ntBASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 Nsd1-203ENSMUST00000224156 1149 ntBASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 Rarb-207ENSMUST00000225921 2756 ntBASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc28bQ8CEG5 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc28bQ8CEG5 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc28bQ8CEG5 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Ccdc28bQ8CEG5 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc28bQ8CEG5 Gm45444-201ENSMUST00000211394 898 ntBASIC19.34■□□□□ 0.69
Ccdc28bQ8CEG5 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc28bQ8CEG5 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc28bQ8CEG5 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc28bQ8CEG5 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc28bQ8CEG5 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc28bQ8CEG5 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc28bQ8CEG5 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc28bQ8CEG5 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc28bQ8CEG5 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ccdc28bQ8CEG5 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ccdc28bQ8CEG5 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ccdc28bQ8CEG5 Gm45141-201ENSMUST00000206502 1888 ntBASIC19.33■□□□□ 0.69
Ccdc28bQ8CEG5 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Ccdc28bQ8CEG5 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ccdc28bQ8CEG5 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC19.33■□□□□ 0.68
Ccdc28bQ8CEG5 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ccdc28bQ8CEG5 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Ccdc28bQ8CEG5 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ccdc28bQ8CEG5 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28bQ8CEG5 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28bQ8CEG5 Gm6802-201ENSMUST00000167843 1983 ntBASIC19.32■□□□□ 0.68
Ccdc28bQ8CEG5 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28bQ8CEG5 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC19.32■□□□□ 0.68
Ccdc28bQ8CEG5 Mir6538-201ENSMUST00000183713 110 ntBASIC19.32■□□□□ 0.68
Ccdc28bQ8CEG5 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28bQ8CEG5 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28bQ8CEG5 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28bQ8CEG5 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28bQ8CEG5 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28bQ8CEG5 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28bQ8CEG5 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc28bQ8CEG5 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc28bQ8CEG5 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc28bQ8CEG5 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc28bQ8CEG5 Gm10399-202ENSMUST00000202768 748 ntBASIC19.31■□□□□ 0.68
Ccdc28bQ8CEG5 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC19.31■□□□□ 0.68
Ccdc28bQ8CEG5 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Ccdc28bQ8CEG5 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc28bQ8CEG5 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc28bQ8CEG5 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc28bQ8CEG5 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc28bQ8CEG5 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc28bQ8CEG5 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc28bQ8CEG5 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc28bQ8CEG5 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc28bQ8CEG5 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc28bQ8CEG5 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc28bQ8CEG5 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc28bQ8CEG5 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc28bQ8CEG5 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc28bQ8CEG5 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc28bQ8CEG5 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms