Protein–RNA interactions for Protein: Q8C006

Trim35, Tripartite motif-containing protein 35, mousemouse

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim35Q8C006 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
Trim35Q8C006 AC140930.3-201ENSMUST00000222935 274 ntBASIC19.9■□□□□ 0.78
Trim35Q8C006 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Trim35Q8C006 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim35Q8C006 Ncmap-201ENSMUST00000064481 1448 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
Trim35Q8C006 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim35Q8C006 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim35Q8C006 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
Trim35Q8C006 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim35Q8C006 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Trim35Q8C006 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Trim35Q8C006 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim35Q8C006 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Trim35Q8C006 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim35Q8C006 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Trim35Q8C006 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim35Q8C006 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Trim35Q8C006 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim35Q8C006 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC19.88■□□□□ 0.77
Trim35Q8C006 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC19.88■□□□□ 0.77
Trim35Q8C006 Gm26540-201ENSMUST00000181858 1310 ntTSL 5 BASIC19.88■□□□□ 0.77
Trim35Q8C006 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim35Q8C006 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC19.88■□□□□ 0.77
Trim35Q8C006 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Trim35Q8C006 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC19.88■□□□□ 0.77
Trim35Q8C006 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim35Q8C006 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim35Q8C006 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim35Q8C006 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim35Q8C006 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Trim35Q8C006 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Trim35Q8C006 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim35Q8C006 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim35Q8C006 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim35Q8C006 Gm10657-201ENSMUST00000193528 1031 ntBASIC19.87■□□□□ 0.77
Trim35Q8C006 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Trim35Q8C006 Gm39317-201ENSMUST00000213360 1138 ntTSL 5 BASIC19.87■□□□□ 0.77
Trim35Q8C006 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Trim35Q8C006 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC19.87■□□□□ 0.77
Trim35Q8C006 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trim35Q8C006 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim35Q8C006 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim35Q8C006 Gm5083-202ENSMUST00000163056 1204 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trim35Q8C006 Krt8-ps-201ENSMUST00000208495 945 ntBASIC19.86■□□□□ 0.77
Trim35Q8C006 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC19.86■□□□□ 0.77
Trim35Q8C006 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim35Q8C006 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trim35Q8C006 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim35Q8C006 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim35Q8C006 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim35Q8C006 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim35Q8C006 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim35Q8C006 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim35Q8C006 Gm12821-201ENSMUST00000120022 600 ntBASIC19.85■□□□□ 0.77
Trim35Q8C006 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
Trim35Q8C006 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Trim35Q8C006 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
Trim35Q8C006 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC19.85■□□□□ 0.77
Trim35Q8C006 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim35Q8C006 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim35Q8C006 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Trim35Q8C006 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Trim35Q8C006 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Trim35Q8C006 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim35Q8C006 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC19.84■□□□□ 0.77
Trim35Q8C006 AC124408.1-201ENSMUST00000228938 707 ntBASIC19.84■□□□□ 0.77
Trim35Q8C006 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim35Q8C006 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim35Q8C006 Gm29644-201ENSMUST00000189003 1341 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Trim35Q8C006 Gm15043-201ENSMUST00000118843 1543 ntBASIC19.83■□□□□ 0.77
Trim35Q8C006 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
Trim35Q8C006 Synj2bp-202ENSMUST00000114201 1121 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Trim35Q8C006 1700029E06Rik-201ENSMUST00000189036 757 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Trim35Q8C006 Gm38313-201ENSMUST00000191953 1266 ntBASIC19.83■□□□□ 0.77
Trim35Q8C006 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Trim35Q8C006 Appbp2os-202ENSMUST00000206972 447 ntBASIC19.83■□□□□ 0.77
Trim35Q8C006 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trim35Q8C006 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC19.83■□□□□ 0.76
Trim35Q8C006 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trim35Q8C006 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trim35Q8C006 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trim35Q8C006 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trim35Q8C006 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
Trim35Q8C006 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trim35Q8C006 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Trim35Q8C006 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim35Q8C006 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Trim35Q8C006 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim35Q8C006 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim35Q8C006 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Trim35Q8C006 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Trim35Q8C006 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Trim35Q8C006 Olfr1460-ps1-201ENSMUST00000208975 899 ntBASIC19.82■□□□□ 0.76
Trim35Q8C006 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim35Q8C006 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim35Q8C006 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC19.81■□□□□ 0.76
Trim35Q8C006 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
Trim35Q8C006 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim35Q8C006 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trim35Q8C006 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms