Protein–RNA interactions for Protein: Q6PFD9

Nup98, Nuclear pore complex protein Nup98-Nup96, mousemouse

Known RBP Predictions only

Length 1,816 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup98Q6PFD9 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Nup98Q6PFD9 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Nup98Q6PFD9 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Nup98Q6PFD9 Cdkn3-203ENSMUST00000227149 1952 ntBASIC23.55■■□□□ 1.36
Nup98Q6PFD9 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
Nup98Q6PFD9 Gm27011-201ENSMUST00000182352 972 ntBASIC23.55■■□□□ 1.36
Nup98Q6PFD9 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Nup98Q6PFD9 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Nup98Q6PFD9 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC23.55■■□□□ 1.36
Nup98Q6PFD9 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC23.55■■□□□ 1.36
Nup98Q6PFD9 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Nup98Q6PFD9 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
Nup98Q6PFD9 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Nup98Q6PFD9 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
Nup98Q6PFD9 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
Nup98Q6PFD9 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
Nup98Q6PFD9 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
Nup98Q6PFD9 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
Nup98Q6PFD9 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
Nup98Q6PFD9 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
Nup98Q6PFD9 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Nup98Q6PFD9 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Nup98Q6PFD9 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
Nup98Q6PFD9 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Nup98Q6PFD9 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Nup98Q6PFD9 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Nup98Q6PFD9 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC23.53■■□□□ 1.36
Nup98Q6PFD9 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
Nup98Q6PFD9 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
Nup98Q6PFD9 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Nup98Q6PFD9 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Nup98Q6PFD9 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
Nup98Q6PFD9 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC23.52■■□□□ 1.36
Nup98Q6PFD9 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
Nup98Q6PFD9 Gm13148-201ENSMUST00000118892 745 ntBASIC23.52■■□□□ 1.36
Nup98Q6PFD9 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC23.52■■□□□ 1.36
Nup98Q6PFD9 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
Nup98Q6PFD9 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Nup98Q6PFD9 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Nup98Q6PFD9 AA386476-201ENSMUST00000098781 1665 ntBASIC23.51■■□□□ 1.35
Nup98Q6PFD9 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Nup98Q6PFD9 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Nup98Q6PFD9 Gm7514-201ENSMUST00000209475 934 ntBASIC23.51■■□□□ 1.35
Nup98Q6PFD9 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
Nup98Q6PFD9 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
Nup98Q6PFD9 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Nup98Q6PFD9 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC23.5■■□□□ 1.35
Nup98Q6PFD9 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Nup98Q6PFD9 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC23.5■■□□□ 1.35
Nup98Q6PFD9 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC23.5■■□□□ 1.35
Nup98Q6PFD9 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Nup98Q6PFD9 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Nup98Q6PFD9 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Nup98Q6PFD9 Gm38205-201ENSMUST00000192243 258 ntBASIC23.49■■□□□ 1.35
Nup98Q6PFD9 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
Nup98Q6PFD9 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC23.49■■□□□ 1.35
Nup98Q6PFD9 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Nup98Q6PFD9 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC23.48■■□□□ 1.35
Nup98Q6PFD9 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
Nup98Q6PFD9 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
Nup98Q6PFD9 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC23.48■■□□□ 1.35
Nup98Q6PFD9 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC23.48■■□□□ 1.35
Nup98Q6PFD9 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
Nup98Q6PFD9 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Nup98Q6PFD9 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Nup98Q6PFD9 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
Nup98Q6PFD9 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
Nup98Q6PFD9 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC23.47■■□□□ 1.35
Nup98Q6PFD9 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Nup98Q6PFD9 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Nup98Q6PFD9 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC23.47■■□□□ 1.35
Nup98Q6PFD9 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Nup98Q6PFD9 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Nup98Q6PFD9 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC23.46■■□□□ 1.35
Nup98Q6PFD9 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC23.46■■□□□ 1.35
Nup98Q6PFD9 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC23.46■■□□□ 1.35
Nup98Q6PFD9 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Nup98Q6PFD9 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.35
Nup98Q6PFD9 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.35
Nup98Q6PFD9 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC23.45■■□□□ 1.35
Nup98Q6PFD9 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC23.45■■□□□ 1.34
Nup98Q6PFD9 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Nup98Q6PFD9 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Nup98Q6PFD9 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC23.45■■□□□ 1.34
Nup98Q6PFD9 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC23.45■■□□□ 1.34
Nup98Q6PFD9 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC23.45■■□□□ 1.34
Nup98Q6PFD9 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC23.45■■□□□ 1.34
Nup98Q6PFD9 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC23.45■■□□□ 1.34
Nup98Q6PFD9 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC23.45■■□□□ 1.34
Nup98Q6PFD9 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Nup98Q6PFD9 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Nup98Q6PFD9 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Nup98Q6PFD9 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Nup98Q6PFD9 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Nup98Q6PFD9 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Nup98Q6PFD9 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC23.44■■□□□ 1.34
Nup98Q6PFD9 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Nup98Q6PFD9 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
Nup98Q6PFD9 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Nup98Q6PFD9 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms