Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC21.03■□□□□ 0.96
Upf3bQ3ULL6 Wdr70-203ENSMUST00000227371 1130 ntBASIC21.03■□□□□ 0.96
Upf3bQ3ULL6 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Upf3bQ3ULL6 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC21.02■□□□□ 0.96
Upf3bQ3ULL6 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Upf3bQ3ULL6 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC21.02■□□□□ 0.96
Upf3bQ3ULL6 Gm8493-201ENSMUST00000196881 489 ntBASIC21.02■□□□□ 0.96
Upf3bQ3ULL6 Gm6139-201ENSMUST00000079261 882 ntBASIC21.02■□□□□ 0.96
Upf3bQ3ULL6 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Upf3bQ3ULL6 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Upf3bQ3ULL6 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Upf3bQ3ULL6 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Upf3bQ3ULL6 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Upf3bQ3ULL6 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Upf3bQ3ULL6 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Upf3bQ3ULL6 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Upf3bQ3ULL6 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Upf3bQ3ULL6 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Upf3bQ3ULL6 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC21.01■□□□□ 0.95
Upf3bQ3ULL6 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Upf3bQ3ULL6 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Upf3bQ3ULL6 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Upf3bQ3ULL6 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Upf3bQ3ULL6 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Upf3bQ3ULL6 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC21■□□□□ 0.95
Upf3bQ3ULL6 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC21■□□□□ 0.95
Upf3bQ3ULL6 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Upf3bQ3ULL6 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC21■□□□□ 0.95
Upf3bQ3ULL6 Flvcr1-202ENSMUST00000191946 1216 ntBASIC21■□□□□ 0.95
Upf3bQ3ULL6 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Upf3bQ3ULL6 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC21■□□□□ 0.95
Upf3bQ3ULL6 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Upf3bQ3ULL6 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3bQ3ULL6 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3bQ3ULL6 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3bQ3ULL6 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Upf3bQ3ULL6 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
Upf3bQ3ULL6 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Upf3bQ3ULL6 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3bQ3ULL6 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3bQ3ULL6 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3bQ3ULL6 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3bQ3ULL6 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3bQ3ULL6 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3bQ3ULL6 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3bQ3ULL6 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC20.99■□□□□ 0.95
Upf3bQ3ULL6 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3bQ3ULL6 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3bQ3ULL6 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC20.99■□□□□ 0.95
Upf3bQ3ULL6 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Upf3bQ3ULL6 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Upf3bQ3ULL6 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Upf3bQ3ULL6 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC20.98■□□□□ 0.95
Upf3bQ3ULL6 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Upf3bQ3ULL6 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC20.98■□□□□ 0.95
Upf3bQ3ULL6 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Upf3bQ3ULL6 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Upf3bQ3ULL6 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Upf3bQ3ULL6 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Upf3bQ3ULL6 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
Upf3bQ3ULL6 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Upf3bQ3ULL6 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Upf3bQ3ULL6 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Upf3bQ3ULL6 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Upf3bQ3ULL6 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC20.97■□□□□ 0.95
Upf3bQ3ULL6 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC20.97■□□□□ 0.95
Upf3bQ3ULL6 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Upf3bQ3ULL6 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Upf3bQ3ULL6 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Upf3bQ3ULL6 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Upf3bQ3ULL6 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Upf3bQ3ULL6 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Upf3bQ3ULL6 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Upf3bQ3ULL6 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC20.97■□□□□ 0.95
Upf3bQ3ULL6 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Upf3bQ3ULL6 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.96■□□□□ 0.95
Upf3bQ3ULL6 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Upf3bQ3ULL6 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Upf3bQ3ULL6 Gm43173-201ENSMUST00000202246 593 ntBASIC20.96■□□□□ 0.95
Upf3bQ3ULL6 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Upf3bQ3ULL6 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
Upf3bQ3ULL6 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Upf3bQ3ULL6 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Upf3bQ3ULL6 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Upf3bQ3ULL6 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Upf3bQ3ULL6 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.95
Upf3bQ3ULL6 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Upf3bQ3ULL6 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Upf3bQ3ULL6 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Upf3bQ3ULL6 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Upf3bQ3ULL6 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Upf3bQ3ULL6 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Upf3bQ3ULL6 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Upf3bQ3ULL6 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Upf3bQ3ULL6 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Upf3bQ3ULL6 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Upf3bQ3ULL6 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
Upf3bQ3ULL6 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Upf3bQ3ULL6 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Upf3bQ3ULL6 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 87.1 ms