Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ptchd3Q0EEE2 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC18.88■□□□□ 0.61
Ptchd3Q0EEE2 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ptchd3Q0EEE2 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ptchd3Q0EEE2 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ptchd3Q0EEE2 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ptchd3Q0EEE2 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ptchd3Q0EEE2 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ptchd3Q0EEE2 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ptchd3Q0EEE2 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC18.87■□□□□ 0.61
Ptchd3Q0EEE2 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ptchd3Q0EEE2 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Ptchd3Q0EEE2 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC18.87■□□□□ 0.61
Ptchd3Q0EEE2 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC18.87■□□□□ 0.61
Ptchd3Q0EEE2 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC18.87■□□□□ 0.61
Ptchd3Q0EEE2 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC18.87■□□□□ 0.61
Ptchd3Q0EEE2 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ptchd3Q0EEE2 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Ptchd3Q0EEE2 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ptchd3Q0EEE2 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ptchd3Q0EEE2 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ptchd3Q0EEE2 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Ptchd3Q0EEE2 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ptchd3Q0EEE2 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Ptchd3Q0EEE2 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ptchd3Q0EEE2 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ptchd3Q0EEE2 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ptchd3Q0EEE2 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ptchd3Q0EEE2 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ptchd3Q0EEE2 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ptchd3Q0EEE2 AC093043.1-201ENSMUST00000226700 898 ntBASIC18.86■□□□□ 0.61
Ptchd3Q0EEE2 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ptchd3Q0EEE2 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Ptchd3Q0EEE2 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Ptchd3Q0EEE2 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ptchd3Q0EEE2 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Ptchd3Q0EEE2 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC18.85■□□□□ 0.61
Ptchd3Q0EEE2 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ptchd3Q0EEE2 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Ptchd3Q0EEE2 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ptchd3Q0EEE2 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ptchd3Q0EEE2 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ptchd3Q0EEE2 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ptchd3Q0EEE2 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC18.85■□□□□ 0.61
Ptchd3Q0EEE2 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC18.85■□□□□ 0.61
Ptchd3Q0EEE2 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC18.85■□□□□ 0.61
Ptchd3Q0EEE2 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ptchd3Q0EEE2 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ptchd3Q0EEE2 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ptchd3Q0EEE2 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ptchd3Q0EEE2 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC18.85■□□□□ 0.61
Ptchd3Q0EEE2 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.85■□□□□ 0.61
Ptchd3Q0EEE2 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ptchd3Q0EEE2 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC18.84■□□□□ 0.61
Ptchd3Q0EEE2 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Ptchd3Q0EEE2 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ptchd3Q0EEE2 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC18.84■□□□□ 0.61
Ptchd3Q0EEE2 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ptchd3Q0EEE2 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ptchd3Q0EEE2 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ptchd3Q0EEE2 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ptchd3Q0EEE2 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ptchd3Q0EEE2 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ptchd3Q0EEE2 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ptchd3Q0EEE2 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ptchd3Q0EEE2 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ptchd3Q0EEE2 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ptchd3Q0EEE2 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Ptchd3Q0EEE2 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Ptchd3Q0EEE2 Etf1-202ENSMUST00000180351 108 ntBASIC18.83■□□□□ 0.6
Ptchd3Q0EEE2 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC18.83■□□□□ 0.6
Ptchd3Q0EEE2 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ptchd3Q0EEE2 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ptchd3Q0EEE2 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ptchd3Q0EEE2 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
Ptchd3Q0EEE2 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ptchd3Q0EEE2 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ptchd3Q0EEE2 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC18.82■□□□□ 0.6
Ptchd3Q0EEE2 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ptchd3Q0EEE2 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ptchd3Q0EEE2 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Ptchd3Q0EEE2 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ptchd3Q0EEE2 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Ptchd3Q0EEE2 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ptchd3Q0EEE2 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ptchd3Q0EEE2 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ptchd3Q0EEE2 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC18.81■□□□□ 0.6
Ptchd3Q0EEE2 Gm9959-201ENSMUST00000068277 390 ntBASIC18.81■□□□□ 0.6
Ptchd3Q0EEE2 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ptchd3Q0EEE2 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.81■□□□□ 0.6
Ptchd3Q0EEE2 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC18.81■□□□□ 0.6
Ptchd3Q0EEE2 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Ptchd3Q0EEE2 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Ptchd3Q0EEE2 Gm6802-201ENSMUST00000167843 1983 ntBASIC18.81■□□□□ 0.6
Ptchd3Q0EEE2 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ptchd3Q0EEE2 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ptchd3Q0EEE2 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ptchd3Q0EEE2 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ptchd3Q0EEE2 Gm7417-201ENSMUST00000192950 473 ntBASIC18.8■□□□□ 0.6
Ptchd3Q0EEE2 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms