Protein–RNA interactions for Protein: P79621

Ciita, MHC class II transactivator, mousemouse

Predictions only

Length 1,155 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CiitaP79621 Gm14281-201ENSMUST00000121700 1294 ntBASIC21.39■■□□□ 1.01
CiitaP79621 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC21.39■■□□□ 1.01
CiitaP79621 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CiitaP79621 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CiitaP79621 Gm6277-202ENSMUST00000224036 2779 ntBASIC21.39■■□□□ 1.01
CiitaP79621 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
CiitaP79621 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CiitaP79621 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CiitaP79621 Gm27801-201ENSMUST00000184174 223 ntBASIC21.38■■□□□ 1.01
CiitaP79621 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CiitaP79621 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CiitaP79621 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CiitaP79621 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
CiitaP79621 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CiitaP79621 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC21.37■■□□□ 1.01
CiitaP79621 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CiitaP79621 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC21.37■■□□□ 1.01
CiitaP79621 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
CiitaP79621 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC21.37■■□□□ 1.01
CiitaP79621 Slc35b2-207ENSMUST00000226086 850 ntBASIC21.37■■□□□ 1.01
CiitaP79621 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC21.37■■□□□ 1.01
CiitaP79621 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CiitaP79621 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CiitaP79621 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC21.36■■□□□ 1.01
CiitaP79621 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CiitaP79621 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC21.36■■□□□ 1.01
CiitaP79621 Gm10849-201ENSMUST00000100397 618 ntBASIC21.36■■□□□ 1.01
CiitaP79621 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CiitaP79621 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CiitaP79621 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC21.36■■□□□ 1.01
CiitaP79621 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CiitaP79621 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CiitaP79621 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC21.35■■□□□ 1.01
CiitaP79621 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CiitaP79621 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CiitaP79621 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
CiitaP79621 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC21.35■■□□□ 1.01
CiitaP79621 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CiitaP79621 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CiitaP79621 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CiitaP79621 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
CiitaP79621 Gm43909-201ENSMUST00000203443 1876 ntBASIC21.35■■□□□ 1.01
CiitaP79621 AA386476-201ENSMUST00000098781 1665 ntBASIC21.34■■□□□ 1.01
CiitaP79621 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CiitaP79621 Gm26571-201ENSMUST00000181399 666 ntBASIC21.34■■□□□ 1.01
CiitaP79621 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CiitaP79621 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CiitaP79621 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CiitaP79621 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CiitaP79621 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CiitaP79621 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
CiitaP79621 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
CiitaP79621 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CiitaP79621 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CiitaP79621 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CiitaP79621 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CiitaP79621 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
CiitaP79621 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
CiitaP79621 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
CiitaP79621 Gm42642-201ENSMUST00000200683 355 ntBASIC21.33■■□□□ 1.01
CiitaP79621 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CiitaP79621 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CiitaP79621 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CiitaP79621 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CiitaP79621 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
CiitaP79621 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC21.33■■□□□ 1
CiitaP79621 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
CiitaP79621 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CiitaP79621 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC21.32■■□□□ 1
CiitaP79621 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC21.32■■□□□ 1
CiitaP79621 AC154266.1-201ENSMUST00000223190 503 ntBASIC21.32■■□□□ 1
CiitaP79621 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CiitaP79621 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC21.32■■□□□ 1
CiitaP79621 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CiitaP79621 Gm42911-201ENSMUST00000199360 1630 ntBASIC21.32■■□□□ 1
CiitaP79621 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC21.32■■□□□ 1
CiitaP79621 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CiitaP79621 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC21.31■■□□□ 1
CiitaP79621 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
CiitaP79621 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC21.31■■□□□ 1
CiitaP79621 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC21.31■■□□□ 1
CiitaP79621 Gm10033-202ENSMUST00000211874 928 ntBASIC21.31■■□□□ 1
CiitaP79621 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CiitaP79621 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC21.31■■□□□ 1
CiitaP79621 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CiitaP79621 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CiitaP79621 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC21.3■■□□□ 1
CiitaP79621 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
CiitaP79621 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC21.3■■□□□ 1
CiitaP79621 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC21.3■■□□□ 1
CiitaP79621 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC21.3■■□□□ 1
CiitaP79621 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC21.3■■□□□ 1
CiitaP79621 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CiitaP79621 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC21.29■■□□□ 1
CiitaP79621 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CiitaP79621 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC21.29■■□□□ 1
CiitaP79621 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC21.29■■□□□ 1
CiitaP79621 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC21.29■■□□□ 1
CiitaP79621 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CiitaP79621 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms