Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Gm8770-201ENSMUST00000121113 1109 ntBASIC21.56■■□□□ 1.04
Hmgb1P63158 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Hmgb1P63158 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Hmgb1P63158 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Hmgb1P63158 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC21.55■■□□□ 1.04
Hmgb1P63158 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
Hmgb1P63158 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC21.55■■□□□ 1.04
Hmgb1P63158 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Hmgb1P63158 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
Hmgb1P63158 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC21.54■■□□□ 1.04
Hmgb1P63158 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC21.54■■□□□ 1.04
Hmgb1P63158 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC21.54■■□□□ 1.04
Hmgb1P63158 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Hmgb1P63158 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
Hmgb1P63158 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Hmgb1P63158 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Hmgb1P63158 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC21.53■■□□□ 1.04
Hmgb1P63158 Gm14117-201ENSMUST00000122417 843 ntBASIC21.53■■□□□ 1.04
Hmgb1P63158 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC21.53■■□□□ 1.04
Hmgb1P63158 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Hmgb1P63158 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Hmgb1P63158 Gm6085-201ENSMUST00000182774 1470 ntBASIC21.52■■□□□ 1.04
Hmgb1P63158 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Hmgb1P63158 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Hmgb1P63158 Hsf1-204ENSMUST00000226872 2104 ntBASIC21.52■■□□□ 1.04
Hmgb1P63158 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Hmgb1P63158 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Hmgb1P63158 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Hmgb1P63158 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Hmgb1P63158 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
Hmgb1P63158 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC21.52■■□□□ 1.04
Hmgb1P63158 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Hmgb1P63158 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Hmgb1P63158 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Hmgb1P63158 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
Hmgb1P63158 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
Hmgb1P63158 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Hmgb1P63158 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Hmgb1P63158 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Hmgb1P63158 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Hmgb1P63158 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Hmgb1P63158 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Hmgb1P63158 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Hmgb1P63158 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
Hmgb1P63158 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Hmgb1P63158 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Hmgb1P63158 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Hmgb1P63158 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Hmgb1P63158 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Hmgb1P63158 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Hmgb1P63158 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC21.5■■□□□ 1.03
Hmgb1P63158 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Hmgb1P63158 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC21.5■■□□□ 1.03
Hmgb1P63158 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Hmgb1P63158 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Hmgb1P63158 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Hmgb1P63158 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC21.5■■□□□ 1.03
Hmgb1P63158 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Hmgb1P63158 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Hmgb1P63158 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
Hmgb1P63158 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Hmgb1P63158 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
Hmgb1P63158 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC21.49■■□□□ 1.03
Hmgb1P63158 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Hmgb1P63158 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Hmgb1P63158 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Hmgb1P63158 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
Hmgb1P63158 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC21.48■■□□□ 1.03
Hmgb1P63158 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Hmgb1P63158 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Hmgb1P63158 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
Hmgb1P63158 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC21.47■■□□□ 1.03
Hmgb1P63158 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Hmgb1P63158 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Hmgb1P63158 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Hmgb1P63158 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Hmgb1P63158 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Hmgb1P63158 Iqck-206ENSMUST00000208658 2891 ntBASIC21.46■■□□□ 1.03
Hmgb1P63158 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Hmgb1P63158 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Hmgb1P63158 AA386476-201ENSMUST00000098781 1665 ntBASIC21.46■■□□□ 1.03
Hmgb1P63158 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Hmgb1P63158 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC21.45■■□□□ 1.03
Hmgb1P63158 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
Hmgb1P63158 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Hmgb1P63158 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Hmgb1P63158 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Hmgb1P63158 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Hmgb1P63158 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Hmgb1P63158 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Hmgb1P63158 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Hmgb1P63158 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Hmgb1P63158 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC21.45■■□□□ 1.02
Hmgb1P63158 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC21.45■■□□□ 1.02
Hmgb1P63158 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Hmgb1P63158 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Hmgb1P63158 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Hmgb1P63158 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
Hmgb1P63158 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Hmgb1P63158 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 15.2 ms