Protein–RNA interactions for Protein: P20040

H-2 class II histocompatibility antigen, E-Q beta chain, mousemouse

Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
P20040 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
P20040 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
P20040 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
P20040 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
P20040 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
P20040 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
P20040 Gm43034-201ENSMUST00000198678 1364 ntBASIC17.36■□□□□ 0.37
P20040 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
P20040 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC17.36■□□□□ 0.37
P20040 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC17.36■□□□□ 0.37
P20040 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC17.36■□□□□ 0.37
P20040 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
P20040 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
P20040 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
P20040 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
P20040 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC17.35■□□□□ 0.37
P20040 Golgb1-201ENSMUST00000023534 498 ntBASIC17.35■□□□□ 0.37
P20040 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
P20040 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
P20040 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
P20040 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
P20040 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
P20040 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
P20040 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
P20040 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
P20040 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
P20040 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
P20040 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
P20040 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
P20040 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
P20040 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
P20040 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
P20040 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
P20040 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC17.33■□□□□ 0.37
P20040 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
P20040 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
P20040 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC17.33■□□□□ 0.36
P20040 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
P20040 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC17.33■□□□□ 0.36
P20040 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
P20040 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC17.32■□□□□ 0.36
P20040 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
P20040 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
P20040 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
P20040 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC17.32■□□□□ 0.36
P20040 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
P20040 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC17.31■□□□□ 0.36
P20040 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
P20040 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
P20040 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
P20040 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
P20040 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
P20040 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
P20040 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
P20040 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
P20040 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
P20040 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
P20040 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
P20040 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
P20040 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
P20040 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC17.3■□□□□ 0.36
P20040 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
P20040 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
P20040 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
P20040 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
P20040 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
P20040 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
P20040 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
P20040 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
P20040 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
P20040 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
P20040 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
P20040 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
P20040 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
P20040 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
P20040 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
P20040 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
P20040 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
P20040 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
P20040 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
P20040 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
P20040 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
P20040 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC17.29■□□□□ 0.36
P20040 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC17.29■□□□□ 0.36
P20040 Gm21956-201ENSMUST00000179946 522 ntBASIC17.29■□□□□ 0.36
P20040 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC17.29■□□□□ 0.36
P20040 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC17.29■□□□□ 0.36
P20040 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
P20040 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
P20040 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
P20040 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
P20040 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC17.28■□□□□ 0.36
P20040 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
P20040 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
P20040 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC17.28■□□□□ 0.36
P20040 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
P20040 AC140930.3-201ENSMUST00000222935 274 ntBASIC17.28■□□□□ 0.36
P20040 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
P20040 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
P20040 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms