Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Chmp6P0C0A3 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC21.28■■□□□ 1
Chmp6P0C0A3 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Chmp6P0C0A3 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Chmp6P0C0A3 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC21.27■■□□□ 1
Chmp6P0C0A3 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Chmp6P0C0A3 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC21.27■■□□□ 1
Chmp6P0C0A3 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Chmp6P0C0A3 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Chmp6P0C0A3 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp6P0C0A3 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC21.26■□□□□ 0.99
Chmp6P0C0A3 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp6P0C0A3 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp6P0C0A3 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp6P0C0A3 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp6P0C0A3 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp6P0C0A3 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Chmp6P0C0A3 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp6P0C0A3 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp6P0C0A3 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC21.26■□□□□ 0.99
Chmp6P0C0A3 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
Chmp6P0C0A3 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chmp6P0C0A3 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chmp6P0C0A3 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chmp6P0C0A3 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Chmp6P0C0A3 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Chmp6P0C0A3 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Chmp6P0C0A3 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chmp6P0C0A3 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chmp6P0C0A3 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chmp6P0C0A3 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chmp6P0C0A3 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chmp6P0C0A3 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Chmp6P0C0A3 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Chmp6P0C0A3 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Chmp6P0C0A3 Gm27045-201ENSMUST00000182145 1402 ntBASIC21.24■□□□□ 0.99
Chmp6P0C0A3 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
Chmp6P0C0A3 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Chmp6P0C0A3 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Chmp6P0C0A3 Gm37035-201ENSMUST00000194809 2148 ntBASIC21.24■□□□□ 0.99
Chmp6P0C0A3 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Chmp6P0C0A3 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
Chmp6P0C0A3 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Chmp6P0C0A3 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Chmp6P0C0A3 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Chmp6P0C0A3 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Chmp6P0C0A3 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Chmp6P0C0A3 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Chmp6P0C0A3 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Chmp6P0C0A3 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Chmp6P0C0A3 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Chmp6P0C0A3 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Chmp6P0C0A3 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Chmp6P0C0A3 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Chmp6P0C0A3 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Chmp6P0C0A3 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Chmp6P0C0A3 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Chmp6P0C0A3 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Chmp6P0C0A3 Gm10209-201ENSMUST00000203397 1607 ntBASIC21.22■□□□□ 0.99
Chmp6P0C0A3 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Chmp6P0C0A3 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Chmp6P0C0A3 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Chmp6P0C0A3 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Chmp6P0C0A3 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Chmp6P0C0A3 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Chmp6P0C0A3 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Chmp6P0C0A3 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Chmp6P0C0A3 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Chmp6P0C0A3 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
Chmp6P0C0A3 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Chmp6P0C0A3 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Chmp6P0C0A3 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Chmp6P0C0A3 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC21.21■□□□□ 0.99
Chmp6P0C0A3 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Chmp6P0C0A3 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Chmp6P0C0A3 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Chmp6P0C0A3 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Chmp6P0C0A3 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Chmp6P0C0A3 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Chmp6P0C0A3 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Chmp6P0C0A3 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Chmp6P0C0A3 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Chmp6P0C0A3 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Chmp6P0C0A3 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
Chmp6P0C0A3 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC21.2■□□□□ 0.98
Chmp6P0C0A3 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Chmp6P0C0A3 Gm7160-202ENSMUST00000188519 1027 ntBASIC21.2■□□□□ 0.98
Chmp6P0C0A3 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Chmp6P0C0A3 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Chmp6P0C0A3 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Chmp6P0C0A3 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC21.2■□□□□ 0.98
Chmp6P0C0A3 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Chmp6P0C0A3 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Chmp6P0C0A3 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Chmp6P0C0A3 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
Chmp6P0C0A3 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC21.19■□□□□ 0.98
Chmp6P0C0A3 Gm8493-201ENSMUST00000196881 489 ntBASIC21.19■□□□□ 0.98
Chmp6P0C0A3 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Chmp6P0C0A3 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC21.19■□□□□ 0.98
Chmp6P0C0A3 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms