Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm32219-201ENSMUST00000221234 1819 ntTSL 5 BASIC11.69□□□□□ -0.54
Traf1P39428 Mapkap1-203ENSMUST00000113126 3018 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Sh3rf2-201ENSMUST00000072008 5092 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Mamld1-201ENSMUST00000082088 4796 ntAPPRIS P4 TSL 5 BASIC11.69□□□□□ -0.54
Traf1P39428 Tfam-201ENSMUST00000092430 4167 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Rcan2-201ENSMUST00000044792 3237 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Gm10531-201ENSMUST00000193527 2303 ntBASIC11.69□□□□□ -0.54
Traf1P39428 Tmem106a-201ENSMUST00000039581 2304 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Lyn-201ENSMUST00000041377 3463 ntAPPRIS ALT1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Ilf3-208ENSMUST00000214758 3177 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Traf1P39428 Flna-202ENSMUST00000101454 8345 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Slc27a5-201ENSMUST00000032539 2288 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Cnppd1-202ENSMUST00000168720 3669 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 Zmynd8-221ENSMUST00000177633 5093 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 Tpm3-204ENSMUST00000119570 2233 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 AC117656.2-201ENSMUST00000224931 2215 ntBASIC11.68□□□□□ -0.54
Traf1P39428 Zfp956-201ENSMUST00000101445 2761 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 Tor1aip2-204ENSMUST00000111754 2491 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 Abl2-202ENSMUST00000166172 10151 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 Gm3532-201ENSMUST00000181880 1396 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Traf1P39428 Traf1-207ENSMUST00000172159 3436 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 Iyd-201ENSMUST00000019896 1579 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 Gm9992-201ENSMUST00000070059 1593 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 Apc-203ENSMUST00000115781 12346 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Traf1P39428 Fn1-203ENSMUST00000186129 7797 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 Ccdc33-204ENSMUST00000119665 2552 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 Il18bp-202ENSMUST00000209368 2596 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 Clip3-201ENSMUST00000014065 3300 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 Ccdc15-202ENSMUST00000213633 3331 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Traf1P39428 Ighv1-49-201ENSMUST00000103519 294 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Traf1P39428 Itpa-ps1-201ENSMUST00000117207 597 ntBASIC11.68□□□□□ -0.54
Traf1P39428 Gm7847-201ENSMUST00000151645 777 ntBASIC11.68□□□□□ -0.54
Traf1P39428 Gm26356-201ENSMUST00000158217 283 ntBASIC11.68□□□□□ -0.54
Traf1P39428 Pitpnm2os2-201ENSMUST00000159053 828 ntTSL 2 BASIC11.68□□□□□ -0.54
Traf1P39428 4930471C04Rik-201ENSMUST00000166038 865 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 Mc5r-201ENSMUST00000172148 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 Gm17944-201ENSMUST00000186351 643 ntBASIC11.68□□□□□ -0.54
Traf1P39428 AC160991.1-201ENSMUST00000224924 753 ntBASIC11.68□□□□□ -0.54
Traf1P39428 AC154643.1-201ENSMUST00000225643 625 ntBASIC11.68□□□□□ -0.54
Traf1P39428 Gm13271-201ENSMUST00000094992 549 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Traf1P39428 Gm44664-201ENSMUST00000206841 1786 ntBASIC11.68□□□□□ -0.54
Traf1P39428 5930420M18Rik-201ENSMUST00000202893 2281 ntBASIC11.68□□□□□ -0.54
Traf1P39428 Cmya5-201ENSMUST00000062122 11850 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 9630001P10Rik-201ENSMUST00000181083 2799 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 Acp1-202ENSMUST00000074038 2754 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 Parva-201ENSMUST00000033030 4454 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 Itgad-201ENSMUST00000033051 3965 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 Ndn-201ENSMUST00000038775 3694 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Traf1P39428 Bcl9-201ENSMUST00000046521 6102 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Traf1P39428 Hyou1-206ENSMUST00000161318 4489 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Traf1P39428 Gm45867-201ENSMUST00000208201 2317 ntBASIC11.68□□□□□ -0.54
Traf1P39428 Gm44907-201ENSMUST00000207423 1633 ntBASIC11.68□□□□□ -0.54
Traf1P39428 Cckar-202ENSMUST00000200691 3230 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 4930539E08Rik-201ENSMUST00000062357 4597 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 Tubgcp5-205ENSMUST00000205796 3448 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 Lrfn5-202ENSMUST00000119481 3615 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 Zbtb3-201ENSMUST00000172175 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 Kalrn-202ENSMUST00000089655 6506 ntTSL 5 BASIC11.67□□□□□ -0.54
Traf1P39428 Slc25a27-201ENSMUST00000024705 2687 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 Hist4h4-201ENSMUST00000179285 2863 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
Traf1P39428 Tro-203ENSMUST00000112709 6610 ntAPPRIS P3 TSL 5 BASIC11.67□□□□□ -0.54
Traf1P39428 Gm8968-201ENSMUST00000199133 1303 ntBASIC11.67□□□□□ -0.54
Traf1P39428 Pla2g5-203ENSMUST00000102512 1976 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 Atp6v1c2-202ENSMUST00000095820 1549 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 Crocc2-201ENSMUST00000138595 7132 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Traf1P39428 Nr2c1-201ENSMUST00000092213 2376 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Traf1P39428 Etnppl-203ENSMUST00000166187 1712 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 Sfxn1-201ENSMUST00000021930 2783 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 Mir598-201ENSMUST00000102094 79 ntBASIC11.67□□□□□ -0.54
Traf1P39428 Mir744-201ENSMUST00000103261 100 ntBASIC11.67□□□□□ -0.54
Traf1P39428 Ighv6-3-201ENSMUST00000103486 356 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
Traf1P39428 Ighv6-6-201ENSMUST00000103489 357 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
Traf1P39428 Rhox2-ps-201ENSMUST00000117421 322 ntBASIC11.67□□□□□ -0.54
Traf1P39428 Gm12700-201ENSMUST00000118145 457 ntBASIC11.67□□□□□ -0.54
Traf1P39428 Olfr1060-ps1-201ENSMUST00000118335 943 ntBASIC11.67□□□□□ -0.54
Traf1P39428 Gm13700-201ENSMUST00000118624 1128 ntBASIC11.67□□□□□ -0.54
Traf1P39428 Gm6881-201ENSMUST00000121811 833 ntBASIC11.67□□□□□ -0.54
Traf1P39428 Eif4a-ps4-201ENSMUST00000122226 1218 ntBASIC11.67□□□□□ -0.54
Traf1P39428 Gm25661-201ENSMUST00000157704 296 ntBASIC11.67□□□□□ -0.54
Traf1P39428 Tnnc1-202ENSMUST00000169169 721 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 D130017N08Rik-201ENSMUST00000180460 510 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 Tmem242-202ENSMUST00000185896 780 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 Gm34248-201ENSMUST00000200027 474 ntBASIC11.67□□□□□ -0.54
Traf1P39428 Gm45481-201ENSMUST00000209717 877 ntBASIC11.67□□□□□ -0.54
Traf1P39428 Gm32872-201ENSMUST00000220037 205 ntTSL 3 BASIC11.67□□□□□ -0.54
Traf1P39428 AC166061.1-201ENSMUST00000225163 1138 ntBASIC11.67□□□□□ -0.54
Traf1P39428 Gm8256-202ENSMUST00000227964 828 ntBASIC11.67□□□□□ -0.54
Traf1P39428 Phf5a-201ENSMUST00000023117 864 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 Scgb3a1-201ENSMUST00000043873 493 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 Olfr1349-201ENSMUST00000051982 1054 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
Traf1P39428 Olfr1121-201ENSMUST00000062555 945 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
Traf1P39428 Msln-201ENSMUST00000075884 2114 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 Scgb3a1-202ENSMUST00000076006 598 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 Snd1-206ENSMUST00000167201 3781 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 AC153498.1-201ENSMUST00000219775 2722 ntBASIC11.67□□□□□ -0.54
Traf1P39428 Adat1-202ENSMUST00000120457 1677 ntTSL 5 BASIC11.67□□□□□ -0.54
Traf1P39428 Atxn1l-201ENSMUST00000093162 7526 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
Traf1P39428 Gm42031-201ENSMUST00000209823 1885 ntTSL 5 BASIC11.67□□□□□ -0.54
Traf1P39428 Cyp2g1-201ENSMUST00000040944 1896 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Traf1P39428 Tmem63a-201ENSMUST00000027800 3306 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms